LICENSE
MANIFEST.in
README.md
setup.py
setup_ViOTUcluster.sh
setup_ViOTUcluster_yaml.sh
Modules/Preprocess_module.sh
Modules/TPM_caculate_Module.sh
Modules/ViOTUcluster
Modules/ViOTUcluster_AllinOne
Modules/ViOTUcluster_Check
Modules/ViOTUcluster_Test
Modules/ViOTUcluster_download-database
Modules/binning_merge_module.sh
Modules/cross_validation_module.sh
Modules/drep_module.sh
Modules/run_dram_analysis.sh
Modules/run_iphop_analysis.sh
Modules/summary_module.sh
Modules/viral_prediction_module.sh
ViOTUcluster/ContigsPreprocess.py
ViOTUcluster/CrossValid.py
ViOTUcluster/DRAM-setup.py
ViOTUcluster/FilterRawResSeqs.py
ViOTUcluster/MergeRes.py
ViOTUcluster/Mergebins.py
ViOTUcluster/MergedClusterSeqs.py
ViOTUcluster/Move2bin.py
ViOTUcluster/Rename.py
ViOTUcluster/SelectCluster.py
ViOTUcluster/SpiltFasta.py
ViOTUcluster/TPM_caculate.py
ViOTUcluster/__init__.py
ViOTUcluster/anicalc.py
ViOTUcluster/aniclust.py
ViOTUcluster/check_removal.py
ViOTUcluster/concat_fasta_sequences.py
ViOTUcluster/config.py
ViOTUcluster/filter_contigs.py
ViOTUcluster/filter_reads_for_bin_reassembly.py
ViOTUcluster/format_taxonomy.py
ViOTUcluster/iPhop-setup.py
ViOTUcluster/pipeline.py
ViOTUcluster/rm_short_contigs.py
ViOTUcluster/run_DRAM.py
ViOTUcluster/run_iphop.py
ViOTUcluster/select_best_bins.py
ViOTUcluster/task_utils.py
ViOTUcluster/temppyhmmer.py
ViOTUcluster/unbined.py
ViOTUcluster/validation.py
ViOTUcluster/viotucluster_allinone_cli.py
ViOTUcluster/viotucluster_cli.py
ViOTUcluster/viralprediction.py
ViOTUcluster/viralverify
ViOTUcluster/compat/__init__.py
ViOTUcluster/compat/fastaparser.py
environments/dram.yml
environments/iphop-cpu.yml
environments/iphop.yml
environments/viotucluster-cpu.yml
environments/viotucluster.yml
environments/viralverify.yml
environments/vrhyme.yml
setup_scripts/Move2bin.py
test/Minitest1_R1.fastq.gz
test/Minitest1_R2.fastq.gz
test/Minitest2_R1.fastq.gz
test/Minitest2_R2.fastq.gz
tests/test_allinone_contract.py
tests/test_contigs_preprocess_contract.py
tests/test_fastaparser_compat.py
tests/test_pipeline_module_timeout_contract.py
tests/test_pipeline_orchestration_contract.py
tests/test_release_contract.py
tests/test_shell_contracts.py
tests/test_summary_abundance_integration.py
tests/test_task_utils_contract.py
tests/test_tpm_calculate.py
tests/test_validation.py
tests/test_viralverify_resolution_contract.py
tests/test_yaml_install_contract.py
viotucluster.egg-info/PKG-INFO
viotucluster.egg-info/SOURCES.txt
viotucluster.egg-info/dependency_links.txt
viotucluster.egg-info/entry_points.txt
viotucluster.egg-info/requires.txt
viotucluster.egg-info/top_level.txt