# Subtimizer example runs
examples/

# Exceptions (Keep these files)
!examples/example_list_of_complexes.dat
!examples/ALK_axltide/alk_axltd.fasta

# Python
__pycache__/
*.py[cod]
*$py.class

# Distribution / Packaging
.Python
build/
develop-eggs/
dist/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# Environment
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# Editors
.vscode/
.idea/
*.swp
*.swo

# MacOS
.DS_Store

# Subtimizer specific (if any generated data in root)
# (Assuming examples/ might contain data users want to keep or ignore depending on size)
