{% extends "variants/variants_layout.html" %}
{% from "variants/utils.html" import cell_rank, filter_form_footer, mei_filters, variant_link_href %}
{% from "variants/components.html" import frequency_cell_general, overlapping_cell, variant_gene_symbols_cell, variant_funct_anno_cell %}

{% block category_title %}
Mobile Element Insertion variants
{% endblock %}

{% block variants_form_action %}
  {{url_for('variants.mei_variants', institute_id=institute._id, case_name=case.display_name)}}
{% endblock %}

{% block variants_filter %}
  {{ mei_filters(form, institute, case) }}
{% endblock %}

{% block variants_filter_form_footer %}
  {{ filter_form_footer(form, result_size, total_variants, page, variants|length, institute) }}
{% endblock %}

{% block variants_table_header %}
  <tr>
    <th scope="col" style="width:3%"></th>
    <th scope="col" title="Rank position">Rank</th>
    <th scope="col" title="Rank score">Score</th>
    <th scope="col">Type</th>
    <th scope="col" style="width:18%">Element</th>
    <th scope="col" title="Chromosome">Chr</th>
    <th scope="col" style="width:9%">Start loc</th>
    <th scope="col">Frequency</th>
    <th scope="col">Gene(s)</th>
    <th scope="col" title="Functional annotation">Function</th>
    <th scope="col" title="Gene overlapping variants in affected individuals">Overlap</th>
  </tr>
{% endblock %}

{% block variants_table_rows %}
  {% for variant in variants %}
    {{ variant_row(variant) }}
  {% else %}
    <tr>
      <td colspan="11">No matching variants</td>
    </tr>
  {% endfor %}
{% endblock %}

{% macro variant_row(variant) %}
  <tr data-target="_blank" data-href="{{ variant_link_href(variant, institute, case) }}"
  {% if variant.dismiss_variant %}
    class="dismiss">
  {% elif 'causatives' in case and variant._id in case.causatives %}
    class="causative">
  {% else %}
    >
  {% endif %}
    <td class="no-row-click"><input form="filters_form" type="checkbox" value="{{variant._id}}" name="dismiss" onclick="enableDismiss()"></td>
    <td class="text-start">
      {{ cell_rank(variant, institute, case, form, manual_rank_options) }}
    </td>
    <td class="text-end">{{ variant.rank_score|int }}</td>
    <td>{{ variant.sub_category|upper }}</td>
    <td>{{ variant.mei_name }}</td>
    <td>{{ variant.chromosome if variant.chromosome == variant.end_chrom else variant.chromosome+'-'+variant.end_chrom }}</td>
    <td class="col-2"><span style="white-space: nowrap;">{{ variant.position|human_longint|safe }}</span></td>
    <td>
      {{ frequency_cell_general(variant) }}
    </td>
    <td>
      {{ variant_gene_symbols_cell(variant, inherit_palette) }}
    </td>
    <td style="word-wrap:break-word;">
      {{ variant_funct_anno_cell(variant) }}
    </td>
    <td>{{ overlapping_cell(variant, institute, case) }}</td>
  </tr>
{% endmacro %}