README.md
pyproject.toml
src/mirna_toolkit/__init__.py
src/mirna_toolkit/batch.py
src/mirna_toolkit/cli.py
src/mirna_toolkit/pipeline.py
src/mirna_toolkit.egg-info/PKG-INFO
src/mirna_toolkit.egg-info/SOURCES.txt
src/mirna_toolkit.egg-info/dependency_links.txt
src/mirna_toolkit.egg-info/entry_points.txt
src/mirna_toolkit.egg-info/requires.txt
src/mirna_toolkit.egg-info/top_level.txt
src/mirna_toolkit/alignment/__init__.py
src/mirna_toolkit/alignment/bowtie.py
src/mirna_toolkit/alignment/hisat2.py
src/mirna_toolkit/alignment/star.py
src/mirna_toolkit/disease/__init__.py
src/mirna_toolkit/disease/hmdd.py
src/mirna_toolkit/disease/mircancer.py
src/mirna_toolkit/io/__init__.py
src/mirna_toolkit/io/bam.py
src/mirna_toolkit/io/downloaders.py
src/mirna_toolkit/io/fastq.py
src/mirna_toolkit/io/gtf.py
src/mirna_toolkit/ml/__init__.py
src/mirna_toolkit/ml/classifiers.py
src/mirna_toolkit/ml/explainability.py
src/mirna_toolkit/ml/preprocessing.py
src/mirna_toolkit/prediction/__init__.py
src/mirna_toolkit/prediction/confidence.py
src/mirna_toolkit/prediction/mirecords_api.py
src/mirna_toolkit/prediction/mirtarbase_api.py
src/mirna_toolkit/prediction/rnahybrid.py
src/mirna_toolkit/prediction/seed_match.py
src/mirna_toolkit/prediction/targetscan_api.py
src/mirna_toolkit/quantification/__init__.py
src/mirna_toolkit/quantification/counts.py
src/mirna_toolkit/quantification/normalization.py
src/mirna_toolkit/quantification/novel.py
src/mirna_toolkit/utils/__init__.py
src/mirna_toolkit/utils/config.py
src/mirna_toolkit/utils/http.py
src/mirna_toolkit/utils/logging.py
src/mirna_toolkit/utils/plugins.py
src/mirna_toolkit/utils/versioning.py
src/mirna_toolkit/visualization/__init__.py
src/mirna_toolkit/visualization/heatmaps.py
src/mirna_toolkit/visualization/networks.py
src/mirna_toolkit/visualization/pathway.py
src/mirna_toolkit/visualization/volcano.py
tests/test_batch.py
tests/test_cli.py
tests/test_external_wrappers.py
tests/test_http_utils.py
tests/test_normalization.py
tests/test_novel.py
tests/test_pipeline.py
tests/test_plugins.py
tests/test_prediction.py
tests/test_versioning.py