LICENSE
README.md
pyproject.toml
src/rocit/__init__.py
src/rocit/cli.py
src/rocit/config.py
src/rocit/constants.py
src/rocit/pipeline.py
src/rocit/validation.py
src/rocit.egg-info/PKG-INFO
src/rocit.egg-info/SOURCES.txt
src/rocit.egg-info/dependency_links.txt
src/rocit.egg-info/entry_points.txt
src/rocit.egg-info/requires.txt
src/rocit.egg-info/top_level.txt
src/rocit/data/__init__.py
src/rocit/data/datamodule.py
src/rocit/data/dataset.py
src/rocit/models/__init__.py
src/rocit/models/lightning_module.py
src/rocit/models/model_architecture.py
src/rocit/preprocessing/__init__.py
src/rocit/preprocessing/bam_tools.py
src/rocit/preprocessing/extract_pacbio_cpg_info.py
src/rocit/preprocessing/loh_data_labeller.py
src/rocit/preprocessing/prepare_somatic_data.py
src/rocit/preprocessing/process_cpg_distribution.py
src/rocit/preprocessing/snv_data_labeller.py
src/rocit/preprocessing/tumor_data_labeller.py
src/rocit/preprocessing/variant_processing.py
src/rocit/utils/__init__.py