| gemlib/__init__.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| gemlib/abc/__init__.py |
(no function) |
|
2 |
0 |
0 |
|
100% |
| gemlib/abc/abc_rejection_sampler.py |
abc_rejection_sampler |
|
4 |
0 |
0 |
|
100% |
| gemlib/abc/abc_rejection_sampler.py |
abc_rejection_sampler.fn |
|
3 |
0 |
0 |
|
100% |
| gemlib/abc/abc_rejection_sampler.py |
(no function) |
|
9 |
0 |
0 |
|
100% |
| gemlib/deterministic/__init__.py |
(no function) |
|
2 |
0 |
0 |
|
100% |
| gemlib/deterministic/ode_model.py |
_total_flux |
|
4 |
0 |
0 |
|
100% |
| gemlib/deterministic/ode_model.py |
ode_model |
|
18 |
6 |
0 |
|
67% |
| gemlib/deterministic/ode_model.py |
ode_model.derivs |
|
4 |
0 |
0 |
|
100% |
| gemlib/deterministic/ode_model.py |
(no function) |
|
17 |
0 |
0 |
|
100% |
| gemlib/distributions/__init__.py |
(no function) |
|
3 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianMotion.__init__ |
|
8 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._batch_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._event_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._sample_n |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianMotion._log_prob |
|
3 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianBridge.__init__ |
|
9 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._batch_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._event_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._sample_n |
|
6 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
BrownianBridge._log_prob |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/brownian.py |
(no function) |
|
19 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
_one_hot_expand_state |
|
3 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
_total_flux |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
compute_state |
|
16 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
exponential_propogate |
|
3 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
exponential_propogate.propogate_fn |
|
9 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
continuous_markov_simulation |
|
10 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
continuous_markov_simulation.cond |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
continuous_markov_simulation.body |
|
5 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
continuous_time_log_likelihood |
|
11 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_markov.py |
(no function) |
|
22 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.__init__ |
|
7 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.transition_rate_fn |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.incidence_matrix |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.initial_state |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.num_steps |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.initial_time |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel.compute_state |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._sample_n |
|
5 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._sample_n.one_sample |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._log_prob |
|
7 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._log_prob.one_log_prob |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._event_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
ContinuousTimeStateTransitionModel._batch_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/continuous_time_state_transition_model.py |
(no function) |
|
32 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
_scatter_to_transition_matrix |
|
5 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
_approx_expm |
|
10 |
1 |
0 |
|
90% |
| gemlib/distributions/discrete_markov.py |
make_transition_prob_matrix_fn |
|
3 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
make_transition_prob_matrix_fn.fn |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
_multinomial_log_prob |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
_multinomial_log_prob_fwd |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
_multinomial_log_prob_bwd |
|
5 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
compute_state |
|
8 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
chain_binomial_propagate |
|
2 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
chain_binomial_propagate.propagate_fn |
|
16 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
discrete_markov_simulation |
|
9 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
discrete_markov_simulation.scan_fn |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
discrete_markov_log_prob |
|
12 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_markov.py |
(no function) |
|
21 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.__init__ |
|
6 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.transition_rate_fn |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.incidence_matrix |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.initial_state |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.initial_step |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.source_states |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.time_delta |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.num_steps |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.num_units |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.num_states |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._batch_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._event_shape |
|
2 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.compute_state |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel.transition_prob_matrix |
|
5 |
1 |
0 |
|
80% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._sample_n |
|
6 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._sample_n.one_sample |
|
2 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._log_prob |
|
6 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
DiscreteTimeStateTransitionModel._log_prob.one_log_prob |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
_compute_source_states |
|
3 |
0 |
0 |
|
100% |
| gemlib/distributions/discrete_time_state_transition_model.py |
(no function) |
|
42 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
_log_factorial |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
_log_choose |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.__init__ |
|
11 |
2 |
0 |
|
82% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._parameter_properties |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._param_shapes |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._params_event_ndims |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.N |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.K |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric.n |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._default_event_space_bijector |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._event_shape_tensor |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._event_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._sample_n |
|
3 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._log_prob |
|
3 |
3 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._mode |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._mean |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric.py |
Hypergeometric._variance |
|
4 |
4 |
0 |
|
0% |
| gemlib/distributions/hypergeometric.py |
(no function) |
|
31 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric_sampler.py |
sample_hypergeometric |
|
32 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric_sampler.py |
sample_hypergeometric._log_hypergeometric_coeff |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric_sampler.py |
sample_hypergeometric.generate_and_test_samples |
|
9 |
0 |
0 |
|
100% |
| gemlib/distributions/hypergeometric_sampler.py |
(no function) |
|
9 |
0 |
0 |
|
100% |
| gemlib/distributions/kcategorical.py |
_log_choose |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical.__init__ |
|
6 |
0 |
0 |
|
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._parameter_properties |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical.k |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical.mask |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._batch_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._event_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._sample_n |
|
5 |
0 |
0 |
|
100% |
| gemlib/distributions/kcategorical.py |
UniformKCategorical._log_prob |
|
2 |
0 |
0 |
|
100% |
| gemlib/distributions/kcategorical.py |
(no function) |
|
18 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.__init__ |
|
8 |
1 |
0 |
|
88% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._parameter_properties |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.low |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.high |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger.float_dtype |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._event_shape_tensor |
|
1 |
1 |
0 |
|
0% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._event_shape |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._sample_n |
|
6 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._prob |
|
4 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
UniformInteger._log_prob |
|
1 |
0 |
0 |
|
100% |
| gemlib/distributions/uniform_integer.py |
(no function) |
|
20 |
0 |
0 |
|
100% |
| gemlib/func_util.py |
_check_deprecated |
|
2 |
0 |
0 |
|
100% |
| gemlib/func_util.py |
_check_deprecated.dep_fn |
|
4 |
0 |
0 |
|
100% |
| gemlib/func_util.py |
maybe_combine_fn |
|
4 |
0 |
0 |
|
100% |
| gemlib/func_util.py |
maybe_combine_fn.fn_combined |
|
1 |
0 |
0 |
|
100% |
| gemlib/func_util.py |
(no function) |
|
4 |
0 |
0 |
|
100% |
| gemlib/math.py |
cumsum |
|
9 |
0 |
0 |
|
100% |
| gemlib/math.py |
cumsum_np |
|
11 |
1 |
0 |
|
91% |
| gemlib/math.py |
multiply_no_nan |
|
2 |
0 |
0 |
|
100% |
| gemlib/math.py |
(no function) |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/__init__.py |
(no function) |
|
13 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_hmc.py |
make_initial_running_variance |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_hmc.py |
make_initial_running_variance.fn |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc |
|
6 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc._build_kernel |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc.init_fn |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_hmc.py |
adaptive_hmc.step_fn |
|
11 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_hmc.py |
(no function) |
|
16 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
adaptive_rwmh |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
adaptive_rwmh.init_fn |
|
13 |
2 |
0 |
|
85% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
adaptive_rwmh.step_fn |
|
25 |
0 |
0 |
|
100% |
| gemlib/mcmc/adaptive_random_walk_metropolis.py |
(no function) |
|
27 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/__init__.py |
(no function) |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/fixtures.py |
sir_metapop_example |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/fixtures.py |
(no function) |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
_update_state |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
_reverse_update |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.__init__ |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.target_log_prob_fn |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.transition_index |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.incidence_matrix |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.max_timepoint |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.max_events |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.name |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.parameters |
|
1 |
1 |
0 |
|
0% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.is_calibrated |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.one_step |
|
13 |
1 |
0 |
|
92% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
UncalibratedLeftCensoredEventTimesUpdate.bootstrap_results |
|
6 |
1 |
0 |
|
83% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_impl.py |
(no function) |
|
40 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
_get_state_tuple |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
_repack_state_tuple |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh |
|
6 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh._build_kernel |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh.init_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
left_censored_events_mh.step_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_mh.py |
(no function) |
|
25 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
_mask_max |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal |
|
11 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.unit |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.timepoint |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.direction |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.num_events |
|
8 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.num_events.pull_from_past |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
left_censored_event_time_proposal.num_events.push_to_past |
|
6 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/left_censored_events_proposal.py |
(no function) |
|
11 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events._build_kernel |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events.init_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
move_events.step_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events.py |
(no function) |
|
18 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
events_state_count_bounding_fn |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
events_state_count_bounding_fn.fn |
|
11 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_is_within |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_timepoint_selector |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_delta_selector |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_make_event_count_selector |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_make_event_count_selector.fn |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
discrete_move_events_proposal |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
discrete_move_events_proposal.proposal |
|
11 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_apply_move |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
_reverse_move |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.__init__ |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.target_log_prob_fn |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.incidence_matrix |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.initial_conditions |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.target_transition_id |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.num_units |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.delta_max |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.count_max |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.name |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.parameters |
|
1 |
1 |
0 |
|
0% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.is_calibrated |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate._proposal |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.one_step |
|
16 |
3 |
0 |
|
81% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
UncalibratedEventTimesUpdate.bootstrap_results |
|
6 |
2 |
0 |
|
67% |
| gemlib/mcmc/discrete_time_state_transition_model/move_events_impl.py |
(no function) |
|
55 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
_is_row_nonzero |
|
1 |
1 |
0 |
|
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
_maybe_expand_dims |
|
1 |
1 |
0 |
|
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
_add_events |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.__init__ |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.target_log_prob_fn |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.incidence_matrix |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.target_transition_id |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.initial_conditions |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.count_max |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.t_range |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.name |
|
1 |
1 |
0 |
|
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.parameters |
|
1 |
1 |
0 |
|
0% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.is_calibrated |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.one_step |
|
16 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.one_step.add_occult_fn |
|
10 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.one_step.del_occult_fn |
|
10 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
UncalibratedOccultUpdate.bootstrap_results |
|
6 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_impl.py |
(no function) |
|
49 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh._build_kernel |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh.init_fn |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
right_censored_events_mh.step_fn |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_mh.py |
(no function) |
|
21 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
_slice_min |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
add_occult_proposal |
|
6 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
add_occult_proposal.proposal |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
del_occult_proposal |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
del_occult_proposal.proposal |
|
13 |
0 |
0 |
|
100% |
| gemlib/mcmc/discrete_time_state_transition_model/right_censored_events_proposal.py |
(no function) |
|
10 |
0 |
0 |
|
100% |
| gemlib/mcmc/hmc.py |
hmc |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/hmc.py |
hmc._make_momentum_distribution |
|
3 |
1 |
0 |
|
67% |
| gemlib/mcmc/hmc.py |
hmc._build_kernel |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/hmc.py |
hmc.init_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/hmc.py |
hmc.step_fn |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/hmc.py |
(no function) |
|
14 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_sampler.py |
_split_seed |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_sampler.py |
_scan |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_sampler.py |
mcmc |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_sampler.py |
mcmc.one_step |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_sampler.py |
(no function) |
|
9 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_util.py |
is_list_like |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_util.py |
get_flattening_bijector |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/mcmc_util.py |
(no function) |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.init_fn |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.step_fn |
|
8 |
0 |
0 |
|
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.step_fn.body |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/multi_scan.py |
multi_scan.step_fn.cond |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/multi_scan.py |
(no function) |
|
6 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
as_list |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
_make_target_type |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
_make_position_projector |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
_make_position_projector.fn |
|
7 |
1 |
0 |
|
86% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__ |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__._name_target |
|
1 |
1 |
0 |
|
0% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.init |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.init.conditional_tlp |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.step |
|
8 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
MwgStep.__new__.step.conditional_tlp |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/mwg_step.py |
(no function) |
|
13 |
0 |
0 |
|
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh._build_kernel |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh.init_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/random_walk_metropolis.py |
rwmh.step_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/random_walk_metropolis.py |
(no function) |
|
11 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
TargetDensityFnType.__call__ |
|
0 |
0 |
1 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitFnType.__call__ |
|
0 |
0 |
1 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepFnType.__call__ |
|
0 |
0 |
1 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_maybe_flatten |
|
5 |
5 |
0 |
|
0% |
| gemlib/mcmc/sampling_algorithm.py |
_squeeze |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_maybe_list |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_maybe_tuple |
|
3 |
3 |
0 |
|
0% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.__init__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.__call__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.then |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.then.compound_init_fn |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelInitMonad.__rshift__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.__init__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.__call__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.then |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.then.compound_step_kernel |
|
7 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
KernelStepMonad.__rshift__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.__init__ |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.init |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.step |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.then |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.__rshift__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.__mul__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
SamplingAlgorithm.__rmul__ |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_repeat_sampling_algorithm |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_repeat_sampling_algorithm.init_fn |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_repeat_sampling_algorithm.step_fn |
|
8 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_repeat_sampling_algorithm.step_fn.body |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
_repeat_sampling_algorithm.step_fn.cond |
|
2 |
0 |
0 |
|
100% |
| gemlib/mcmc/sampling_algorithm.py |
(no function) |
|
49 |
0 |
17 |
|
100% |
| gemlib/mcmc/test_util.py |
counting_kernel |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/test_util.py |
counting_kernel.init_fn |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/test_util.py |
counting_kernel.step_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/test_util.py |
(no function) |
|
8 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
map_structure |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
map_structure.is_leaf |
|
1 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
_transform_tlp_fn |
|
4 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
_transform_tlp_fn.fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
transform_sampling_algorithm |
|
3 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
transform_sampling_algorithm.init_fn |
|
5 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
transform_sampling_algorithm.step_fn |
|
10 |
0 |
0 |
|
100% |
| gemlib/mcmc/transformed_sampling_algorithm.py |
(no function) |
|
8 |
0 |
0 |
|
100% |
| gemlib/prng_util.py |
sanitize_key |
|
5 |
1 |
0 |
|
80% |
| gemlib/prng_util.py |
(no function) |
|
3 |
0 |
0 |
|
100% |
| gemlib/spatial/__init__.py |
(no function) |
|
2 |
0 |
0 |
|
100% |
| gemlib/spatial/sp_dist.py |
pdist |
|
3 |
0 |
0 |
|
100% |
| gemlib/spatial/sp_dist.py |
include_all |
|
2 |
2 |
0 |
|
0% |
| gemlib/spatial/sp_dist.py |
_pdist_indices_mask |
|
7 |
0 |
0 |
|
100% |
| gemlib/spatial/sp_dist.py |
compress_distance |
|
2 |
0 |
0 |
|
100% |
| gemlib/spatial/sp_dist.py |
sparse_pdist |
|
14 |
1 |
1 |
|
93% |
| gemlib/spatial/sp_dist.py |
(no function) |
|
18 |
0 |
0 |
|
100% |
| gemlib/tensor_util.py |
broadcast_together |
|
6 |
0 |
0 |
|
100% |
| gemlib/tensor_util.py |
broadcast_fn_to |
|
2 |
0 |
0 |
|
100% |
| gemlib/tensor_util.py |
broadcast_fn_to.wrapped |
|
4 |
1 |
0 |
|
75% |
| gemlib/tensor_util.py |
(no function) |
|
5 |
0 |
0 |
|
100% |
| gemlib/util.py |
batch_gather |
|
9 |
0 |
0 |
|
100% |
| gemlib/util.py |
transition_coords |
|
3 |
0 |
0 |
|
100% |
| gemlib/util.py |
transition_coords_tuple |
|
1 |
0 |
0 |
|
100% |
| gemlib/util.py |
states_from_transition_idx |
|
2 |
0 |
0 |
|
100% |
| gemlib/util.py |
(no function) |
|
9 |
0 |
0 |
|
100% |