./.claude/settings.json
./.github/workflows/workspace-ci.yml
./.gitignore
./.pbg/schemas/phase.schema.json
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./.pytest_cache/.gitignore
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./datasets/README.md
./docs/README.md
./docs/decisions.yaml
./experiments/README.md
./experiments/_runs.yaml
./phases/.keep
./pyproject.toml
./references/README.md
./references/claims.yaml
./references/expert/.keep
./references/notes/.keep
./references/papers.bib
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./reports/assets/.keep
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./scripts/_catalog/modules.json
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./scripts/_lib/_root.py
./scripts/_lib/bibtex.py
./scripts/_lib/imports.py
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./scripts/_lib/phase_md.py
./scripts/_lib/pyproject_edit.py
./scripts/_lib/report.py
./scripts/_lib/work_state.py
./scripts/_lib/workspace_yaml.py
./scripts/_migrate_v1_to_v2.py
./scripts/_server/client.js
./scripts/_server/server.py
./scripts/_server/walkthrough.js
./scripts/_templates/_assets/render-helpers.js
./scripts/_templates/_assets/style.css
./scripts/_templates/index.html.j2
./scripts/add-dataset.sh
./scripts/add-reference.sh
./scripts/compare-runs.py
./scripts/lint-workspace.py
./scripts/render-dashboard.py
./scripts/serve.sh
./tests/test_pyproject_edit.py
./workspace.yaml
