# source files > 300 LOC
src/spectramr/application/use_cases/nr_metric_validation_use_case.py  # 428 loc
src/spectramr/application/use_cases/nr_validation/aggregator.py  # 709 loc
src/spectramr/application/use_cases/nr_validation/tier3_cho.py  # 347 loc
src/spectramr/application/use_cases/nr_validation/tier4_construct.py  # 374 loc
src/spectramr/bootstrap.py  # 367 loc
src/spectramr/cli/app.py  # 3355 loc
src/spectramr/cli/audit_plan_novel_cli.py  # 475 loc
src/spectramr/cli/manifest_dispatch.py  # 327 loc
src/spectramr/config/config_builder.py  # 495 loc
src/spectramr/config/schemas/acceleration.py  # 340 loc
src/spectramr/config/schemas/audit_plan_novel_2026_validators.py  # 357 loc
src/spectramr/config/schemas/audit_plan_novel_validators.py  # 325 loc
src/spectramr/config/schemas/base.py  # 1007 loc
src/spectramr/config/schemas/campaign.py  # 398 loc
src/spectramr/config/schemas/data.py  # 3856 loc
src/spectramr/config/schemas/defaults_provider.py  # 468 loc
src/spectramr/config/schemas/enums.py  # 661 loc
src/spectramr/config/schemas/loader.py  # 379 loc
src/spectramr/config/schemas/logging.py  # 301 loc
src/spectramr/config/schemas/loss.py  # 1994 loc
src/spectramr/config/schemas/metrics.py  # 621 loc
src/spectramr/config/schemas/multi_stage_config_validator.py  # 570 loc
src/spectramr/config/schemas/optimization.py  # 549 loc
src/spectramr/config/schemas/physics.py  # 2383 loc
src/spectramr/config/schemas/renames.py  # 1287 loc
src/spectramr/config/schemas/training/base.py  # 1561 loc
src/spectramr/config/schemas/training/diffusion.py  # 303 loc
src/spectramr/config/schemas/training/pipeline.py  # 562 loc
src/spectramr/config/schemas/training/quality_matching.py  # 321 loc
src/spectramr/config/schemas/training/strategy_knobs_2026_06.py  # 391 loc
src/spectramr/config/schemas/training/strategy_knobs_2026_08.py  # 369 loc
src/spectramr/config/schemas/trellis.py  # 447 loc
src/spectramr/config/schemas/validation.py  # 504 loc
src/spectramr/config/schemas/validator_registry.py  # 957 loc
src/spectramr/config/settings.py  # 664 loc
src/spectramr/config/validation_constants.py  # 1318 loc
src/spectramr/core/execution_ledger.py  # 641 loc
src/spectramr/core/metrics/advanced_metrics.py  # 502 loc
src/spectramr/core/metrics/anchor_conformal.py  # 319 loc
src/spectramr/core/metrics/computer.py  # 506 loc
src/spectramr/core/metrics/equivariance_defect.py  # 352 loc
src/spectramr/core/metrics/evaluation_metrics.py  # 2846 loc
src/spectramr/core/metrics/flow_metrics.py  # 375 loc
src/spectramr/core/metrics/inference.py  # 525 loc
src/spectramr/core/metrics/meta_evaluation/aggregation.py  # 401 loc
src/spectramr/core/metrics/meta_evaluation/figures.py  # 1203 loc
src/spectramr/core/metrics/meta_evaluation/leaderboard.py  # 400 loc
src/spectramr/core/metrics/meta_evaluation/pipeline.py  # 629 loc
src/spectramr/core/metrics/meta_evaluation/rankers/clinical.py  # 2083 loc
src/spectramr/core/metrics/meta_evaluation/rankers/sim2rank.py  # 713 loc
src/spectramr/core/metrics/meta_evaluation/simulator.py  # 665 loc
src/spectramr/core/metrics/meta_evaluation/tables.py  # 484 loc
src/spectramr/core/metrics/metric_directions.py  # 423 loc
src/spectramr/core/metrics/no_reference_metrics.py  # 746 loc
src/spectramr/core/metrics/nr_artifact.py  # 609 loc
src/spectramr/core/metrics/nr_consistency.py  # 697 loc
src/spectramr/core/metrics/nr_cross.py  # 547 loc
src/spectramr/core/metrics/nr_prior_geometry.py  # 674 loc
src/spectramr/core/metrics/nr_spectral.py  # 568 loc
src/spectramr/core/metrics/nr_stability.py  # 475 loc
src/spectramr/core/metrics/nr_texture.py  # 914 loc
src/spectramr/core/metrics/perceptual_advanced.py  # 529 loc
src/spectramr/core/metrics/perfusion_metrics.py  # 424 loc
src/spectramr/core/metrics/physics_nr_metrics.py  # 1021 loc
src/spectramr/core/metrics/qa_metrics.py  # 336 loc
src/spectramr/core/metrics/quantitative/persistent_homology_mrf.py  # 328 loc
src/spectramr/core/metrics/radiomic.py  # 663 loc
src/spectramr/core/metrics/regions/eligibility.py  # 747 loc
src/spectramr/core/metrics/registry.py  # 557 loc
src/spectramr/core/metrics/report_step_metrics.py  # 755 loc
src/spectramr/core/metrics/robustness_metrics.py  # 346 loc
src/spectramr/core/metrics/spectroscopy_metrics.py  # 360 loc
src/spectramr/core/metrics/statistical_tests.py  # 553 loc
src/spectramr/core/metrics/temporal_metrics.py  # 331 loc
src/spectramr/core/metrics/tissue_segmentation.py  # 450 loc
src/spectramr/core/resources.py  # 334 loc
src/spectramr/core/topology.py  # 343 loc
src/spectramr/data/annotations/fastmri_plus.py  # 463 loc
src/spectramr/data/batch_types.py  # 303 loc
src/spectramr/data/builders/dataset_instantiator.py  # 1625 loc
src/spectramr/data/builders/manifest_loader.py  # 389 loc
src/spectramr/data/builders/torchio_queue_builder.py  # 760 loc
src/spectramr/data/builders/torchio_subject_builder.py  # 1029 loc
src/spectramr/data/builders/torchio_transform_builder.py  # 1666 loc
src/spectramr/data/collation/strategies.py  # 1079 loc
src/spectramr/data/collation/strategy_selector.py  # 370 loc
src/spectramr/data/datasets/axis_exposure.py  # 340 loc
src/spectramr/data/datasets/bart_dataset.py  # 443 loc
src/spectramr/data/datasets/contrast_aware.py  # 626 loc
src/spectramr/data/datasets/inference_dataset.py  # 326 loc
src/spectramr/data/datasets/m4raw_dataset.py  # 1263 loc
src/spectramr/data/datasets/mrixfields_dataset.py  # 1214 loc
src/spectramr/data/datasets/pde_synthetic.py  # 337 loc
src/spectramr/data/datasets/preprocessed_dataset.py  # 1033 loc
src/spectramr/data/datasets/quantitative_dataset.py  # 472 loc
src/spectramr/data/datasets/slice_dataset.py  # 569 loc
src/spectramr/data/datasets/universal_dataset.py  # 581 loc
src/spectramr/data/eda/catalog.py  # 346 loc
src/spectramr/data/eda/layout_audit.py  # 565 loc
src/spectramr/data/eda/loader.py  # 685 loc
src/spectramr/data/io_strategies.py  # 1073 loc
src/spectramr/data/metadata/index_builder.py  # 1184 loc
src/spectramr/data/nifti_export.py  # 552 loc
src/spectramr/data/profiler.py  # 722 loc
src/spectramr/data/regions/mask_cache.py  # 431 loc
src/spectramr/data/sources/fastmri_brain_source.py  # 516 loc
src/spectramr/data/synthesis/vlf_simulator.py  # 427 loc
src/spectramr/data/transforms/benchmarking_degradations.py  # 352 loc
src/spectramr/data/transforms/kspace_coil_transforms.py  # 412 loc
src/spectramr/data/transforms/mri_transforms.py  # 437 loc
src/spectramr/data/transforms/normalization.py  # 1079 loc
src/spectramr/data/transforms/realistic_degradations.py  # 839 loc
src/spectramr/data/transforms/sfc_conformal_fmri_keys.py  # 318 loc
src/spectramr/data/transforms/tio_physics.py  # 394 loc
src/spectramr/data/transforms/transforms.py  # 429 loc
src/spectramr/data/twix.py  # 411 loc
src/spectramr/data/writers/output_writer.py  # 323 loc
src/spectramr/domain/entities/entities_3d.py  # 571 loc
src/spectramr/domain/entities/training.py  # 497 loc
src/spectramr/domain/interfaces/service_interfaces.py  # 395 loc
src/spectramr/domain/services/brain_extraction_service.py  # 365 loc
src/spectramr/domain/services/generation_3d_orchestration_service.py  # 650 loc
src/spectramr/domain/services/services.py  # 341 loc
src/spectramr/domain/workflows/profiles.py  # 363 loc
src/spectramr/infrastructure/builders/core/base_builder.py  # 406 loc
src/spectramr/infrastructure/builders/directors/checkpoint_director.py  # 833 loc
src/spectramr/infrastructure/builders/directors/data_pipeline_director.py  # 847 loc
src/spectramr/infrastructure/builders/leaf/data_builders.py  # 689 loc
src/spectramr/infrastructure/builders/leaf/model_builders.py  # 719 loc
src/spectramr/infrastructure/builders/leaf/optimizer_builders.py  # 645 loc
src/spectramr/infrastructure/builders/leaf/physics_builders.py  # 644 loc
src/spectramr/infrastructure/builders/registry.py  # 384 loc
src/spectramr/infrastructure/coordination/hpo_coordinator.py  # 338 loc
src/spectramr/infrastructure/di/di_container.py  # 361 loc
src/spectramr/infrastructure/distributed/distributed_training.py  # 488 loc
src/spectramr/infrastructure/distributed/strategies.py  # 403 loc
src/spectramr/infrastructure/domain_validation.py  # 421 loc
src/spectramr/infrastructure/evaluation/mrixfields_baselines/original_arch.py  # 374 loc
src/spectramr/infrastructure/execution/backends.py  # 423 loc
src/spectramr/infrastructure/inference/base_inference_strategy.py  # 344 loc
src/spectramr/infrastructure/inference/cold_diffusion_inference_strategy.py  # 362 loc
src/spectramr/infrastructure/inference/diffusion_inference_strategy.py  # 733 loc
src/spectramr/infrastructure/inference/disentangled_inference_strategy.py  # 399 loc
src/spectramr/infrastructure/inference/multi_modal_inference.py  # 484 loc
src/spectramr/infrastructure/inference/performance_optimization.py  # 517 loc
src/spectramr/infrastructure/inference/physics_driven_inference_strategy.py  # 305 loc
src/spectramr/infrastructure/inference/processing_strategies.py  # 428 loc
src/spectramr/infrastructure/inference/strategy_detector.py  # 323 loc
src/spectramr/infrastructure/logging/provenance.py  # 822 loc
src/spectramr/infrastructure/loss_audit.py  # 623 loc
src/spectramr/infrastructure/orchestration/campaign_evaluator.py  # 827 loc
src/spectramr/infrastructure/orchestration/campaign_orchestrator.py  # 1146 loc
src/spectramr/infrastructure/orchestration/slurm_backend.py  # 696 loc
src/spectramr/infrastructure/performance_optimizer.py  # 536 loc
src/spectramr/infrastructure/physics/clinical_trust_analyzer.py  # 337 loc
src/spectramr/infrastructure/physics/coil_sensitivity.py  # 1270 loc
src/spectramr/infrastructure/physics/conformal_geometry.py  # 454 loc
src/spectramr/infrastructure/physics/data_consistency.py  # 1386 loc
src/spectramr/infrastructure/physics/degradation_generators.py  # 317 loc
src/spectramr/infrastructure/physics/digital_twin_extensions.py  # 2178 loc
src/spectramr/infrastructure/physics/digital_twin_simulator.py  # 2729 loc
src/spectramr/infrastructure/physics/dispersion.py  # 311 loc
src/spectramr/infrastructure/physics/engine.py  # 405 loc
src/spectramr/infrastructure/physics/fft_ops.py  # 717 loc
src/spectramr/infrastructure/physics/field_simulation.py  # 519 loc
src/spectramr/infrastructure/physics/fno_epg.py  # 403 loc
src/spectramr/infrastructure/physics/forward_operator.py  # 694 loc
src/spectramr/infrastructure/physics/integration.py  # 811 loc
src/spectramr/infrastructure/physics/iterative_recon.py  # 411 loc
src/spectramr/infrastructure/physics/m4raw_pseudo_gt.py  # 494 loc
src/spectramr/infrastructure/physics/magnus_exponential.py  # 427 loc
src/spectramr/infrastructure/physics/manifolds/bloch_manifold.py  # 343 loc
src/spectramr/infrastructure/physics/marker_estimators.py  # 638 loc
src/spectramr/infrastructure/physics/model_observer.py  # 338 loc
src/spectramr/infrastructure/physics/multi_acquisition.py  # 759 loc
src/spectramr/infrastructure/physics/multi_physics_bloch.py  # 441 loc
src/spectramr/infrastructure/physics/qsm.py  # 353 loc
src/spectramr/infrastructure/physics/sampling.py  # 3466 loc
src/spectramr/infrastructure/physics/signal_models/tse_b0_model.py  # 401 loc
src/spectramr/infrastructure/physics/ulf_forward_operator.py  # 555 loc
src/spectramr/infrastructure/physics/vf_corrections.py  # 937 loc
src/spectramr/infrastructure/physics/vf_field_extraction.py  # 1102 loc
src/spectramr/infrastructure/physics/vf_operators.py  # 806 loc
src/spectramr/infrastructure/physics/vf_physics_operators.py  # 596 loc
src/spectramr/infrastructure/physics/virtual_fiducial.py  # 433 loc
src/spectramr/infrastructure/reporting/advanced_reporting.py  # 652 loc
src/spectramr/infrastructure/reporting/cohort_ablation.py  # 388 loc
src/spectramr/infrastructure/reporting/interactive/figures.py  # 335 loc
src/spectramr/infrastructure/reporting/metrics_report_generator.py  # 614 loc
src/spectramr/infrastructure/reporting/pipeline.py  # 630 loc
src/spectramr/infrastructure/reporting/style.py  # 805 loc
src/spectramr/infrastructure/services/__init__.py  # 455 loc
src/spectramr/infrastructure/services/checkpoint_service.py  # 1156 loc
src/spectramr/infrastructure/services/coil_sensitivity_service.py  # 568 loc
src/spectramr/infrastructure/services/device_policy.py  # 401 loc
src/spectramr/infrastructure/services/iteration_counter_service.py  # 356 loc
src/spectramr/infrastructure/services/logging_service.py  # 1272 loc
src/spectramr/infrastructure/services/memory_optimization_service.py  # 450 loc
src/spectramr/infrastructure/services/metrics_tracker.py  # 892 loc
src/spectramr/infrastructure/services/model_compilation_service.py  # 329 loc
src/spectramr/infrastructure/services/model_management_service.py  # 628 loc
src/spectramr/infrastructure/services/pipeline_execution_service.py  # 383 loc
src/spectramr/infrastructure/training/builders/data_builder.py  # 463 loc
src/spectramr/infrastructure/training/builders/loss_builder.py  # 828 loc
src/spectramr/infrastructure/training/builders/model_builder.py  # 654 loc
src/spectramr/infrastructure/training/builders/optimization_builder.py  # 530 loc
src/spectramr/infrastructure/training/debug_snapshot.py  # 717 loc
src/spectramr/infrastructure/training/gradient_stability.py  # 643 loc
src/spectramr/infrastructure/training/loss_schedule_controller.py  # 688 loc
src/spectramr/infrastructure/training/middleware/__init__.py  # 380 loc
src/spectramr/infrastructure/training/mixed_precision.py  # 336 loc
src/spectramr/infrastructure/training/optimization_utils.py  # 385 loc
src/spectramr/infrastructure/training/optimizer_resolution.py  # 571 loc
src/spectramr/infrastructure/training/scheduler_resolution.py  # 388 loc
src/spectramr/infrastructure/training/scheduler_system.py  # 714 loc
src/spectramr/infrastructure/training/schedulers/diffusion_scheduler.py  # 316 loc
src/spectramr/infrastructure/training/snapshot_provenance.py  # 324 loc
src/spectramr/infrastructure/training/state.py  # 359 loc
src/spectramr/infrastructure/training/step_executor.py  # 333 loc
src/spectramr/infrastructure/training/strategies/base.py  # 1833 loc
src/spectramr/infrastructure/training/strategies/bloch_manifold_dps_strategy.py  # 322 loc
src/spectramr/infrastructure/training/strategies/conformal_calibration_strategy.py  # 449 loc
src/spectramr/infrastructure/training/strategies/cut_strategy.py  # 484 loc
src/spectramr/infrastructure/training/strategies/cycle_bloch_strategy.py  # 529 loc
src/spectramr/infrastructure/training/strategies/cyclegan_strategy.py  # 412 loc
src/spectramr/infrastructure/training/strategies/diffusion.py  # 5969 loc
src/spectramr/infrastructure/training/strategies/disentangled_strategy.py  # 1071 loc
src/spectramr/infrastructure/training/strategies/disentangled_vae_strategy.py  # 398 loc
src/spectramr/infrastructure/training/strategies/distillation_strategy.py  # 335 loc
src/spectramr/infrastructure/training/strategies/domain_adaptation.py  # 470 loc
src/spectramr/infrastructure/training/strategies/doob_bridge_strategy.py  # 363 loc
src/spectramr/infrastructure/training/strategies/equivariance_conformal_strategy.py  # 352 loc
src/spectramr/infrastructure/training/strategies/field_cocycle_strategy.py  # 547 loc
src/spectramr/infrastructure/training/strategies/gan.py  # 777 loc
src/spectramr/infrastructure/training/strategies/geomamba_ulf_strategy.py  # 372 loc
src/spectramr/infrastructure/training/strategies/graph_cold_diffusion_strategy.py  # 640 loc
src/spectramr/infrastructure/training/strategies/guided_sr_strategy.py  # 508 loc
src/spectramr/infrastructure/training/strategies/hamiltonian_acquisition_strategy.py  # 363 loc
src/spectramr/infrastructure/training/strategies/mixins/adversarial.py  # 362 loc
src/spectramr/infrastructure/training/strategies/mixins/kspace.py  # 641 loc
src/spectramr/infrastructure/training/strategies/mixins/metrics_mixin.py  # 1423 loc
src/spectramr/infrastructure/training/strategies/mixins/model_validation.py  # 319 loc
src/spectramr/infrastructure/training/strategies/mixins/reconstruction.py  # 522 loc
src/spectramr/infrastructure/training/strategies/motion_meta_strategy.py  # 360 loc
src/spectramr/infrastructure/training/strategies/mrf_acquisition_strategies.py  # 305 loc
src/spectramr/infrastructure/training/strategies/mrs_quantification_strategy.py  # 329 loc
src/spectramr/infrastructure/training/strategies/multi_acquisition_strategy.py  # 965 loc
src/spectramr/infrastructure/training/strategies/padnet_strategy.py  # 303 loc
src/spectramr/infrastructure/training/strategies/perfusion_kinetic_strategy.py  # 350 loc
src/spectramr/infrastructure/training/strategies/phase_contrast_flow_strategy.py  # 313 loc
src/spectramr/infrastructure/training/strategies/physics_driven_strategy.py  # 441 loc
src/spectramr/infrastructure/training/strategies/pinn_strategy.py  # 542 loc
src/spectramr/infrastructure/training/strategies/pipeline_strategy.py  # 1371 loc
src/spectramr/infrastructure/training/strategies/pretraining.py  # 443 loc
src/spectramr/infrastructure/training/strategies/privileged_learning_strategy.py  # 340 loc
src/spectramr/infrastructure/training/strategies/quality_matching_strategy.py  # 1060 loc
src/spectramr/infrastructure/training/strategies/reconstruction.py  # 858 loc
src/spectramr/infrastructure/training/strategies/se3_equivariant_navigator_strategy.py  # 303 loc
src/spectramr/infrastructure/training/strategies/stargan_v2_strategy.py  # 572 loc
src/spectramr/infrastructure/training/strategies/tto_strategy.py  # 328 loc
src/spectramr/infrastructure/training/strategies/vae.py  # 748 loc
src/spectramr/infrastructure/training/strategies/vf_admm_strategy.py  # 367 loc
src/spectramr/infrastructure/training/strategies/vf_consistency_distillation_strategy.py  # 312 loc
src/spectramr/infrastructure/training/strategies/virtual_fiducial_strategy.py  # 951 loc
src/spectramr/infrastructure/training/strategy_factory.py  # 549 loc
src/spectramr/infrastructure/training/utils/domain_inference.py  # 504 loc
src/spectramr/infrastructure/training/utils/kspace_masks.py  # 507 loc
src/spectramr/infrastructure/training/utils/loss_extractors.py  # 348 loc
src/spectramr/infrastructure/training/utils/strategy_context.py  # 313 loc
src/spectramr/infrastructure/training/utils/training_utils.py  # 1170 loc
src/spectramr/infrastructure/validation/compatibility_matrix.py  # 319 loc
src/spectramr/infrastructure/validation/config_health_checker.py  # 12745 loc
src/spectramr/infrastructure/validation/dataset_compliance.py  # 677 loc
src/spectramr/infrastructure/validation/energy_probe.py  # 625 loc
src/spectramr/infrastructure/validation/forward_probe.py  # 1236 loc
src/spectramr/infrastructure/validation/inference.py  # 930 loc
src/spectramr/infrastructure/validation/spec_card.py  # 339 loc
src/spectramr/main.py  # 460 loc
src/spectramr/models/_v6_1_registrations.py  # 366 loc
src/spectramr/models/adaptation/nsp_tta.py  # 313 loc
src/spectramr/models/analysis/extensive_gradient_logger.py  # 495 loc
src/spectramr/models/analysis/profile_training.py  # 1066 loc
src/spectramr/models/blocks/adapters/shape_adapters.py  # 776 loc
src/spectramr/models/blocks/attention.py  # 1170 loc
src/spectramr/models/blocks/attention_utils.py  # 738 loc
src/spectramr/models/blocks/block_registry.py  # 1723 loc
src/spectramr/models/blocks/convolutional.py  # 680 loc
src/spectramr/models/blocks/cross_scan_3d.py  # 304 loc
src/spectramr/models/blocks/dual_domain_attention_kan.py  # 1218 loc
src/spectramr/models/blocks/embeddings.py  # 553 loc
src/spectramr/models/blocks/fusion.py  # 473 loc
src/spectramr/models/blocks/hamiltonian_neural_ode.py  # 388 loc
src/spectramr/models/blocks/metric_sfc.py  # 370 loc
src/spectramr/models/blocks/morton_stem.py  # 324 loc
src/spectramr/models/blocks/radial_linearizer.py  # 335 loc
src/spectramr/models/blocks/residual.py  # 344 loc
src/spectramr/models/blocks/se3_lie_algebra_mamba.py  # 365 loc
src/spectramr/models/blocks/swin.py  # 480 loc
src/spectramr/models/blocks/tall.py  # 444 loc
src/spectramr/models/blocks/topology_linearizer.py  # 479 loc
src/spectramr/models/blocks/trellis_attention.py  # 695 loc
src/spectramr/models/blocks/trellis_transformer.py  # 443 loc
src/spectramr/models/blocks/triton_scan.py  # 333 loc
src/spectramr/models/blocks/unet.py  # 309 loc
src/spectramr/models/blocks/vf_modules.py  # 621 loc
src/spectramr/models/classifiers/guidance_free_classifier.py  # 675 loc
src/spectramr/models/components/siren.py  # 420 loc
src/spectramr/models/components/wav_unet.py  # 308 loc
src/spectramr/models/conditioning/encoders.py  # 317 loc
src/spectramr/models/diffusion/architectures/enhanced_deep_unet.py  # 758 loc
src/spectramr/models/diffusion/architectures/transformer_hybrid_unets.py  # 648 loc
src/spectramr/models/diffusion/base_diffusion.py  # 571 loc
src/spectramr/models/diffusion/bloch_manifold_dps_sampler.py  # 389 loc
src/spectramr/models/diffusion/cold_diffusion.py  # 860 loc
src/spectramr/models/diffusion/ddim_sampler.py  # 431 loc
src/spectramr/models/diffusion/diffusion_parts/swin_transformer_parts.py  # 560 loc
src/spectramr/models/diffusion/diffusion_reconstruction.py  # 616 loc
src/spectramr/models/diffusion/kspace_process.py  # 1271 loc
src/spectramr/models/diffusion/noise_schedules.py  # 850 loc
src/spectramr/models/diffusion/posterior_langevin.py  # 309 loc
src/spectramr/models/diffusion/pula_sampler.py  # 497 loc
src/spectramr/models/diffusion/samplers/posterior_samplers.py  # 424 loc
src/spectramr/models/diffusion/score_sde/score_network.py  # 372 loc
src/spectramr/models/diffusion/simple_enhanced_diffusion.py  # 544 loc
src/spectramr/models/discriminators/kspace_discriminator.py  # 545 loc
src/spectramr/models/domain_adaptation.py  # 624 loc
src/spectramr/models/encoders/divov3_encoder.py  # 361 loc
src/spectramr/models/encoders/hf_ssl_encoders.py  # 410 loc
src/spectramr/models/encoders/medical_dino_encoder.py  # 606 loc
src/spectramr/models/equilibrium/eq_deq.py  # 395 loc
src/spectramr/models/experimental/mk_recon.py  # 410 loc
src/spectramr/models/factories/model_factory.py  # 2817 loc
src/spectramr/models/factories/presets.py  # 328 loc
src/spectramr/models/fingerprinting/gen_mrf.py  # 440 loc
src/spectramr/models/gans/stylegan_kan.py  # 393 loc
src/spectramr/models/gans/stylegan_variants.py  # 544 loc
src/spectramr/models/gans/swin_kan_gan.py  # 593 loc
src/spectramr/models/gans/swin_transformer_kan.py  # 737 loc
src/spectramr/models/gans/vit_kan_gan.py  # 391 loc
src/spectramr/models/generative/mc_cm.py  # 455 loc
src/spectramr/models/generative/pa_pcfm.py  # 495 loc
src/spectramr/models/generative/res_mocodiff.py  # 408 loc
src/spectramr/models/generators/__init__.py  # 570 loc
src/spectramr/models/generators/aftnet_generator.py  # 422 loc
src/spectramr/models/generators/artifact_aware_augmentation.py  # 575 loc
src/spectramr/models/generators/attention_variants.py  # 413 loc
src/spectramr/models/generators/breakthrough_attention_generators.py  # 322 loc
src/spectramr/models/generators/chi_square_diffusion_generator.py  # 335 loc
src/spectramr/models/generators/complex_unet.py  # 381 loc
src/spectramr/models/generators/conditional_diffusion_generator.py  # 710 loc
src/spectramr/models/generators/consistency_model_generator.py  # 408 loc
src/spectramr/models/generators/convolution_variants.py  # 385 loc
src/spectramr/models/generators/cpt_4dmr/cpt_4dmr.py  # 685 loc
src/spectramr/models/generators/cpt_4dmr/spatial_anatomy_net.py  # 352 loc
src/spectramr/models/generators/cross_attention_oracle.py  # 331 loc
src/spectramr/models/generators/css_diff_generator.py  # 544 loc
src/spectramr/models/generators/dcsrn_generator.py  # 365 loc
src/spectramr/models/generators/diff_varnet.py  # 340 loc
src/spectramr/models/generators/diffusion_sr_generator.py  # 1106 loc
src/spectramr/models/generators/disentangled_mri.py  # 1422 loc
src/spectramr/models/generators/dynamic_discriminator_updates.py  # 395 loc
src/spectramr/models/generators/dynamic_mr_nerf.py  # 310 loc
src/spectramr/models/generators/efficient_transformer.py  # 579 loc
src/spectramr/models/generators/elan_generator.py  # 341 loc
src/spectramr/models/generators/fno_generator.py  # 352 loc
src/spectramr/models/generators/foundation_model.py  # 371 loc
src/spectramr/models/generators/geo_fno_generator.py  # 395 loc
src/spectramr/models/generators/geo_mamba_unet.py  # 309 loc
src/spectramr/models/generators/graph_unet_generator.py  # 1773 loc
src/spectramr/models/generators/han_generator.py  # 403 loc
src/spectramr/models/generators/hdsf_mamba_generators.py  # 404 loc
src/spectramr/models/generators/hilbert_mamba_generators.py  # 1460 loc
src/spectramr/models/generators/hybrid_transformer_diffusion_generator.py  # 798 loc
src/spectramr/models/generators/inr_cristal_generator.py  # 470 loc
src/spectramr/models/generators/kan_vae_generator.py  # 623 loc
src/spectramr/models/generators/kspace_cold_diffusion_generator.py  # 3197 loc
src/spectramr/models/generators/latent_diffusion_generator.py  # 1453 loc
src/spectramr/models/generators/latent_flow_generator.py  # 356 loc
src/spectramr/models/generators/mamba_unet.py  # 833 loc
src/spectramr/models/generators/mno_family.py  # 472 loc
src/spectramr/models/generators/multi_contrast_conditioning.py  # 452 loc
src/spectramr/models/generators/multicontrast_fusion_generator.py  # 833 loc
src/spectramr/models/generators/nafnet_generator.py  # 455 loc
src/spectramr/models/generators/neural_advection_generator.py  # 325 loc
src/spectramr/models/generators/padnet.py  # 390 loc
src/spectramr/models/generators/patch_wise_training.py  # 567 loc
src/spectramr/models/generators/pin_inr.py  # 356 loc
src/spectramr/models/generators/pinn_nerf_generator.py  # 329 loc
src/spectramr/models/generators/rcan_generator.py  # 352 loc
src/spectramr/models/generators/reconstruction_variants.py  # 403 loc
src/spectramr/models/generators/rectified_flow_generator.py  # 411 loc
src/spectramr/models/generators/restormer_generator.py  # 541 loc
src/spectramr/models/generators/robust_vae_generator.py  # 345 loc
src/spectramr/models/generators/scanner_shift_adaptation.py  # 567 loc
src/spectramr/models/generators/slat_vae_slab_to_volume.py  # 570 loc
src/spectramr/models/generators/sparse_vae_generator.py  # 377 loc
src/spectramr/models/generators/sparse_vae_slab_to_volume.py  # 335 loc
src/spectramr/models/generators/spiking_unet.py  # 313 loc
src/spectramr/models/generators/split_learning_unet.py  # 361 loc
src/spectramr/models/generators/stargan_v2.py  # 374 loc
src/spectramr/models/generators/swin_diff_rec.py  # 350 loc
src/spectramr/models/generators/swin_diff_rec_kan.py  # 417 loc
src/spectramr/models/generators/swinir_generator.py  # 546 loc
src/spectramr/models/generators/tissue_diffusion_generator.py  # 567 loc
src/spectramr/models/generators/trellis_generator.py  # 587 loc
src/spectramr/models/generators/uncertainty_wrappers.py  # 814 loc
src/spectramr/models/generators/unet_2_5d_generator.py  # 390 loc
src/spectramr/models/generators/unrolled_reconstruction_generator.py  # 586 loc
src/spectramr/models/generators/vae_3d_generator.py  # 478 loc
src/spectramr/models/generators/vae_generator.py  # 558 loc
src/spectramr/models/generators/vf_architecture_blocks.py  # 746 loc
src/spectramr/models/generators/vf_architectures.py  # 1009 loc
src/spectramr/models/generators/vf_field_generators.py  # 1234 loc
src/spectramr/models/generators/vf_kspace_operators.py  # 816 loc
src/spectramr/models/generators/vf_proof_blocks.py  # 1333 loc
src/spectramr/models/generators/vf_reconstruction_generators.py  # 1615 loc
src/spectramr/models/generators/vnet_generator.py  # 375 loc
src/spectramr/models/generators/vqvae_generator.py  # 374 loc
src/spectramr/models/generators/x_diffusion_generator.py  # 419 loc
src/spectramr/models/geometric/storm.py  # 353 loc
src/spectramr/models/init_registry.py  # 303 loc
src/spectramr/models/inr/gumbel_softmax.py  # 408 loc
src/spectramr/models/inr/hamiltonian_nf.py  # 423 loc
src/spectramr/models/inr/hypernetwork.py  # 348 loc
src/spectramr/models/inr/kspace_hash.py  # 404 loc
src/spectramr/models/inr/quaternion_inr.py  # 382 loc
src/spectramr/models/inr/siren.py  # 417 loc
src/spectramr/models/inr/tenf_inr.py  # 517 loc
src/spectramr/models/latent/configurable_architecture.py  # 757 loc
src/spectramr/models/latent/configurable_vae.py  # 350 loc
src/spectramr/models/latent_diffusion/latent_discriminator.py  # 548 loc
src/spectramr/models/latent_diffusion/latent_training_strategies.py  # 786 loc
src/spectramr/models/latent_diffusion/latent_unet.py  # 728 loc
src/spectramr/models/layers/complex_conv.py  # 533 loc
src/spectramr/models/layers/complex_layers.py  # 336 loc
src/spectramr/models/layers/kan/fastkanconv.py  # 593 loc
src/spectramr/models/layers/kan/kan_convs/attention_conv.py  # 1929 loc
src/spectramr/models/layers/kan/kan_convs/fast_kan_conv.py  # 521 loc
src/spectramr/models/layers/kan/kan_convs/kabn_conv.py  # 354 loc
src/spectramr/models/layers/kan/kan_convs/kagn_bottleneck_conv.py  # 1338 loc
src/spectramr/models/layers/kan/kan_convs/kagn_conv.py  # 368 loc
src/spectramr/models/layers/kan/kan_convs/kagn_conv_v2.py  # 356 loc
src/spectramr/models/layers/kan/kan_convs/kajn_conv.py  # 385 loc
src/spectramr/models/layers/kan/kan_convs/kaln_conv.py  # 359 loc
src/spectramr/models/layers/kan/kan_convs/kan_conv.py  # 326 loc
src/spectramr/models/layers/kan/kan_convs/kans/kan.py  # 1166 loc
src/spectramr/models/layers/kan/kan_convs/kans/layers.py  # 1184 loc
src/spectramr/models/layers/kan/kan_convs/moe_kan.py  # 1164 loc
src/spectramr/models/layers/kan/kan_convs/relukan_bottleneck_conv.py  # 420 loc
src/spectramr/models/layers/kan/kan_convs/relukan_conv.py  # 362 loc
src/spectramr/models/layers/kan/kan_convs/wav_kan.py  # 884 loc
src/spectramr/models/layers/kan/kanu_net.py  # 319 loc
src/spectramr/models/lora.py  # 487 loc
src/spectramr/models/losses/complex_losses.py  # 710 loc
src/spectramr/models/losses/composed_loss.py  # 310 loc
src/spectramr/models/losses/computers/base.py  # 343 loc
src/spectramr/models/losses/computers/unified_diffusion_reconstruction.py  # 810 loc
src/spectramr/models/losses/computers/unified_disentangled.py  # 468 loc
src/spectramr/models/losses/computers/unified_gan.py  # 473 loc
src/spectramr/models/losses/computers/unified_vae.py  # 521 loc
src/spectramr/models/losses/cubical_ph_w2_loss.py  # 400 loc
src/spectramr/models/losses/edge_detection.py  # 344 loc
src/spectramr/models/losses/gan_loss_library.py  # 1355 loc
src/spectramr/models/losses/kspace_physics_losses.py  # 374 loc
src/spectramr/models/losses/latent_losses.py  # 354 loc
src/spectramr/models/losses/loss_recommender.py  # 608 loc
src/spectramr/models/losses/perceptual_loss.py  # 707 loc
src/spectramr/models/losses/physics_losses.py  # 2266 loc
src/spectramr/models/losses/registry.py  # 536 loc
src/spectramr/models/losses/regularizers.py  # 469 loc
src/spectramr/models/losses/ssim_loss.py  # 501 loc
src/spectramr/models/losses/standard_losses.py  # 316 loc
src/spectramr/models/losses/vf_losses.py  # 448 loc
src/spectramr/models/losses/vq_losses.py  # 410 loc
src/spectramr/models/losses/weights.py  # 464 loc
src/spectramr/models/mae/mae_generator.py  # 772 loc
src/spectramr/models/mae/simae_generator.py  # 530 loc
src/spectramr/models/mae/simmlm_generator.py  # 507 loc
src/spectramr/models/mamba/bloch_mamba.py  # 492 loc
src/spectramr/models/mamba/bloch_mamba_v2.py  # 371 loc
src/spectramr/models/mamba/cv_ssd.py  # 394 loc
src/spectramr/models/mamba/d2_mamba.py  # 494 loc
src/spectramr/models/mamba/diff_mamba.py  # 313 loc
src/spectramr/models/mamba/neuro_mamba.py  # 316 loc
src/spectramr/models/model_cards.py  # 584 loc
src/spectramr/models/model_compression.py  # 694 loc
src/spectramr/models/motion/lagrange_euler.py  # 398 loc
src/spectramr/models/motion/score_disentangle.py  # 315 loc
src/spectramr/models/navigation/se3_equivariant_dc_navigator.py  # 312 loc
src/spectramr/models/parameter_normalization.py  # 584 loc
src/spectramr/models/physics/bloch_manifold_projector.py  # 491 loc
src/spectramr/models/physics/diff_seq.py  # 410 loc
src/spectramr/models/physics/therm_pinn.py  # 353 loc
src/spectramr/models/pipelines/generation_pipeline.py  # 576 loc
src/spectramr/models/profiling/advanced_profiling.py  # 768 loc
src/spectramr/models/reconstruction/unet.py  # 1196 loc
src/spectramr/models/representations/slat/renderers.py  # 330 loc
src/spectramr/models/shape_inference.py  # 329 loc
src/spectramr/models/specialized/fusion_2d_sr_bundle.py  # 1176 loc
src/spectramr/models/specialized/low_field_augmented_generator.py  # 602 loc
src/spectramr/models/spectral/varnet_kan.py  # 350 loc
src/spectramr/models/stability/gan_balance_manager.py  # 455 loc
src/spectramr/models/stability/stability_linter.py  # 710 loc
src/spectramr/models/synthesis/homotopic_transport.py  # 311 loc
src/spectramr/models/transformer/components.py  # 596 loc
src/spectramr/models/transformer/stable_transformers.py  # 1162 loc
src/spectramr/models/transport/kidot.py  # 543 loc
src/spectramr/models/transport/kidot_transport.py  # 349 loc
src/spectramr/models/trellis/sparse_structure_flow.py  # 363 loc
src/spectramr/models/tuning/adaptive_hyperparameter_config.py  # 747 loc
src/spectramr/models/tuning/enhanced_hyperparameter_tuning.py  # 1024 loc
src/spectramr/models/utilities/stability_analysis.py  # 331 loc
src/spectramr/models/utilities/weight_initialization.py  # 344 loc
src/spectramr/models/vae/sparse_vae.py  # 341 loc
src/spectramr/models/vq/vqvae.py  # 370 loc
src/spectramr/pipelines/ablation.py  # 387 loc
src/spectramr/pipelines/distributed.py  # 373 loc
src/spectramr/pipelines/eval_baselines.py  # 784 loc
src/spectramr/pipelines/fit.py  # 615 loc
src/spectramr/pipelines/hpo.py  # 588 loc
src/spectramr/pipelines/hpo_search_spaces.py  # 451 loc
src/spectramr/pipelines/infer.py  # 577 loc
src/spectramr/pipelines/train.py  # 2779 loc
src/spectramr/pipelines/training_loop.py  # 1947 loc
src/spectramr/shared/ops.py  # 433 loc
src/spectramr/shared/utils/path_security.py  # 338 loc
src/spectramr/shared/utils/preprocessing_qc.py  # 731 loc
src/spectramr/shared/utils/security.py  # 365 loc
src/spectramr/shared/utils/seed_control.py  # 327 loc
src/spectramr/tools/cluster_explorer.py  # 523 loc
