LICENSE
README.md
pyproject.toml
src/bionym/__init__.py
src/bionym/ask.py
src/bionym/cli.py
src/bionym/evidence.py
src/bionym/graph.py
src/bionym/jev.py
src/bionym/llm.py
src/bionym/proposals.py
src/bionym/report.py
src/bionym/resolver.py
src/bionym/species.py
src/bionym.egg-info/PKG-INFO
src/bionym.egg-info/SOURCES.txt
src/bionym.egg-info/dependency_links.txt
src/bionym.egg-info/entry_points.txt
src/bionym.egg-info/requires.txt
src/bionym.egg-info/top_level.txt
src/bionym/_static/components.css
src/bionym/_static/components.iife.js
src/bionym/_static/report.js
src/bionym/clients/__init__.py
src/bionym/clients/expression.py
src/bionym/clients/kegg.py
src/bionym/clients/ncbi.py
src/bionym/clients/oma.py
src/bionym/clients/uniprot.py
src/bionym/clients/veupathdb.py
src/bionym/questions/__init__.py
src/bionym/questions/ask.py
src/bionym/questions/s0_classify.py
src/bionym/questions/s1_resolve.py
src/bionym/questions/s2_assemblies.py
src/bionym/questions/s3_orthologs.py
src/bionym/questions/s4_annotate.py
src/bionym/questions/s5_expression.py
src/bionym/questions/s6_remap.py
tests/test_ask.py
tests/test_backend.py
tests/test_classify.py
tests/test_clients.py
tests/test_graph.py
tests/test_proposals.py
tests/test_report.py
tests/test_resolver.py