LICENSE
MANIFEST.in
README.md
pyproject.toml
src/shapcrn/__init__.py
src/shapcrn/api.py
src/shapcrn/cli.py
src/shapcrn/exceptions.py
src/shapcrn.egg-info/PKG-INFO
src/shapcrn.egg-info/SOURCES.txt
src/shapcrn.egg-info/dependency_links.txt
src/shapcrn.egg-info/entry_points.txt
src/shapcrn.egg-info/requires.txt
src/shapcrn.egg-info/top_level.txt
src/shapcrn/examples/__init__.py
src/shapcrn/examples/usage_example.py
src/shapcrn/pipelines/__init__.py
src/shapcrn/pipelines/importance.py
src/shapcrn/pipelines/network.py
src/shapcrn/pipelines/sensitivity_analysis.py
src/shapcrn/pipelines/knockin/__init__.py
src/shapcrn/pipelines/knockin/knockin_reaction.py
src/shapcrn/pipelines/knockin/knockin_species.py
src/shapcrn/pipelines/knockout/__init__.py
src/shapcrn/pipelines/knockout/knockout_reaction.py
src/shapcrn/pipelines/knockout/knockout_species.py
src/shapcrn/utils/__init__.py
src/shapcrn/utils/graph.py
src/shapcrn/utils/plot.py
src/shapcrn/utils/sensitivity.py
src/shapcrn/utils/simulation.py
src/shapcrn/utils/utils.py
src/shapcrn/utils/sbml/__init__.py
src/shapcrn/utils/sbml/helpers.py
src/shapcrn/utils/sbml/io.py
src/shapcrn/utils/sbml/knock.py
src/shapcrn/utils/sbml/reactions.py
src/shapcrn/utils/sbml/species.py
src/shapcrn/utils/sbml/utils.py
tests/test_api.py
tests/test_cli.py
tests/test_plot.py
tests/test_sbml_io.py
tests/test_sensitivity.py
tests/test_simulation.py
tests/test_utils.py