.gitignore
CHANGELOG.rst
CITATION.cff
LICENSE
MANIFEST.in
PUBLICATIONS.rst
README.rst
old_setup.py
pyproject.toml
requirements.txt
.github/workflows/codecov.yml
.github/workflows/documentation.yml
.github/workflows/package_release.yml
.github/workflows/pull_request.yml
.github/workflows/pypi.yml
.github/workflows/tests.yml
docs/Makefile
docs/api.rst
docs/conf.py
docs/guide.rst
docs/index.rst
docs/license.rst
docs/make.bat
docs/metadata_column_matching.rst
docs/requirements.txt
docs/todo.rst
docs/tutorial.ipynb
docs/_static/css/custom.css
docs/_static/images/mwtab_demo.gif
docs/_static/images/mwtab_logo.png
docs/_static/mwfiles/ST000017_AN000035.json
docs/_static/mwfiles/ST000017_AN000035.json.gz
docs/_static/mwfiles/ST000017_AN000035.txt
docs/_static/mwfiles/ST000017_AN000035.txt.gz
docs/_static/mwfiles/ST000040_AN000060.json
docs/_static/mwfiles/ST000040_AN000060.txt
docs/_static/mwfiles/mwfiles_json.tar.gz
docs/_static/mwfiles/mwfiles_mwtab.zip
docs/_static/mwfiles/diabetes/ST000048_AN000084.txt
docs/_static/mwfiles/diabetes/ST000057_AN000095.txt
docs/_static/mwfiles/mwfiles_dir_json/ST000017_AN000035.json
docs/_static/mwfiles/mwfiles_dir_json/ST000040_AN000060.json
docs/_static/mwfiles/mwfiles_dir_mwtab/ST000017_AN000035.txt
docs/_static/mwfiles/mwfiles_dir_mwtab/ST000040_AN000060.txt
docs/_static/mwfiles/out/readme.txt
src/mwtab/__init__.py
src/mwtab/__main__.py
src/mwtab/_version.py
src/mwtab/cli.py
src/mwtab/converter.py
src/mwtab/duplicates_dict.py
src/mwtab/fileio.py
src/mwtab/metadata_column_matching.py
src/mwtab/mwextract.py
src/mwtab/mwrest.py
src/mwtab/mwschema.py
src/mwtab/mwtab.py
src/mwtab/tokenizer.py
src/mwtab/validator.py
src/mwtab.egg-info/PKG-INFO
src/mwtab.egg-info/SOURCES.txt
src/mwtab.egg-info/dependency_links.txt
src/mwtab.egg-info/entry_points.txt
src/mwtab.egg-info/requires.txt
src/mwtab.egg-info/top_level.txt
tests/fixtures.py
tests/test_cli.py
tests/test_converter.py
tests/test_duplicates_dict.py
tests/test_fileio.py
tests/test_metadata_column_matching.py
tests/test_mwextract.py
tests/test_mwrest.py
tests/test_mwschema.py
tests/test_mwtabfile.py
tests/test_reading.py
tests/test_tokenizer.py
tests/test_validator.py
tests/example_data/mwtab_files.tar
tests/example_data/mwtab_files.tar.bz2
tests/example_data/mwtab_files.tar.gz
tests/example_data/mwtab_files.zip
tests/example_data/files_to_test_error_recovery/1_no_error.json
tests/example_data/files_to_test_error_recovery/2_error.json
tests/example_data/files_to_test_error_recovery/3_no_error.txt
tests/example_data/mwtab_files/ST000122_AN000204.json
tests/example_data/mwtab_files/ST000122_AN000204.txt
tests/example_data/other_mwtab_files/ST000022_AN000041.txt
tests/example_data/other_mwtab_files/ST000022_AN000041_malformed_SSF_line.txt
tests/example_data/other_mwtab_files/ST000022_AN000041_malformed_additional_data.txt
tests/example_data/other_mwtab_files/ST000022_AN000041_malformed_factor.txt
tests/example_data/other_mwtab_files/ST000022_AN000041_missing_tab.txt
tests/example_data/other_mwtab_files/ST000022_AN000041_results_file.txt
tests/example_data/other_mwtab_files/ST000022_AN000041_results_file_bad_location.txt
tests/example_data/other_mwtab_files/ST000122_AN000204_bad_table_type.json
tests/example_data/other_mwtab_files/ST000122_AN000204_binned.json
tests/example_data/other_mwtab_files/ST000122_AN000204_duplicate_keys.json
tests/example_data/other_mwtab_files/ST000122_AN000204_duplicate_keys.txt
tests/example_data/other_mwtab_files/ST000122_AN000204_duplicate_keys_highest_level.json
tests/example_data/other_mwtab_files/ST000122_AN000204_duplicate_subsections.txt
tests/example_data/other_mwtab_files/ST000122_AN000204_extra_sample.txt
tests/example_data/other_mwtab_files/ST000122_AN000204_results_file.txt
tests/example_data/other_mwtab_files/ST000122_AN000204_results_file_bad_location.txt
tests/example_data/other_mwtab_files/bad_file.txt
tests/example_data/other_mwtab_files/corrected_section_order.json
tests/example_data/other_mwtab_files/incorrect_section_order.json
tests/example_data/other_test_data/download_studies_an_ids.json
tests/example_data/other_test_data/download_studies_mixed_ids.json
tests/example_data/other_test_data/download_studies_study_ids.json
tests/example_data/other_test_data/download_studies_with_error.json
tests/example_data/other_test_data/unknown_file_format.asdf
tests/example_data/validation_files/ST000122_AN000204_schema_errors.json
tests/example_data/validation_files/ST000122_AN000204_schema_errors.txt
tests/example_data/validation_files/ST000122_AN000204_validate_extended.json
tests/example_data/validation_files/ST000122_AN000204_validate_extended.txt
tests/example_data/validation_files/ST000122_AN000204_validate_extended2.json
tests/example_data/validation_files/ST000122_AN000204_validate_extended2.txt
tests/example_data/validation_files/ST000122_AN000204_validate_factors.txt
tests/example_data/validation_files/ST000122_AN000204_validate_file.json
tests/example_data/validation_files/ST000122_AN000204_validate_file.txt
tests/example_data/validation_files/ST000122_AN000204_validate_header_lengths.txt
tests/example_data/validation_files/ST000122_AN000204_validate_metabolite_data.json
tests/example_data/validation_files/ST000122_AN000204_validate_metabolite_data.txt
tests/example_data/validation_files/ST000122_AN000204_validate_metabolite_names.json
tests/example_data/validation_files/ST000122_AN000204_validate_metabolite_names.txt
tests/example_data/validation_files/ST000122_AN000204_validate_metabolites.json
tests/example_data/validation_files/ST000122_AN000204_validate_metabolites.txt
tests/example_data/validation_files/ST000122_AN000204_validate_passing.json
tests/example_data/validation_files/ST000122_AN000204_validate_passing.txt
tests/example_data/validation_files/ST000122_AN000204_validate_polarity.json
tests/example_data/validation_files/ST000122_AN000204_validate_polarity.txt
tests/example_data/validation_files/ST000122_AN000204_validate_ssf.json
tests/example_data/validation_files/ST000122_AN000204_validate_ssf.txt
tests/example_data/validation_files/ST000122_AN000204_validate_subsection_uniqueness.txt
tests/example_data/validation_files/ST000122_AN000204_validate_table_values.json
tests/example_data/validation_files/ST000122_AN000204_validate_table_values.txt
tests/example_data/validation_files/ST000122_AN000204_validate_table_values2.json
tests/example_data/validation_files/complete_coverage.json
tests/example_data/validation_files/complete_coverage2.txt
tests/example_data/validation_files/complete_coverage3.json