CHANGELOG.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
msp/__init__.py
msp/__main__.py
msp/agent_tools.py
msp/annotate.py
msp/deg_logging.py
msp/evidence.py
msp/harness.py
msp/inspect.py
msp/log.py
msp/plots.py
msp/report.py
msp/resources.py
msp/steps.py
msp/integrate/__init__.py
msp/integrate/deg.py
msp/integrate/fragments.py
msp/integrate/outliers.py
msp/integrate/pipeline.py
msp/integrate/qc.py
msp_sc.egg-info/PKG-INFO
msp_sc.egg-info/SOURCES.txt
msp_sc.egg-info/dependency_links.txt
msp_sc.egg-info/requires.txt
msp_sc.egg-info/top_level.txt
tests/test_agent_tools.py
tests/test_annotation_batch_guard.py
tests/test_annotation_status.py
tests/test_batch_safeguard.py
tests/test_deg_thread_isolation.py
tests/test_evidence_contracts.py
tests/test_gene_query_bounds.py
tests/test_integrate_end_to_end.py
tests/test_integrate_statistics.py
tests/test_log.py
tests/test_maintenance_contracts.py
tests/test_prior_string_dtype.py
tests/test_regressions.py
tests/test_report_reassignment.py
tests/test_report_sections.py
tests/test_resources.py
tests/test_step_recovery.py