LICENSE
README.md
pyproject.toml
bioutils_collection/__init__.py
bioutils_collection/_version.py
bioutils_collection.egg-info/PKG-INFO
bioutils_collection.egg-info/SOURCES.txt
bioutils_collection.egg-info/dependency_links.txt
bioutils_collection.egg-info/requires.txt
bioutils_collection.egg-info/top_level.txt
bioutils_collection/alignment_functions/__init__.py
bioutils_collection/alignment_functions/blast_score_ratio.py
bioutils_collection/alignment_functions/hamming_distance.py
bioutils_collection/alignment_functions/levenshtein_distance.py
bioutils_collection/alignment_functions/needleman_wunsch.py
bioutils_collection/alignment_functions/pairwise_identity.py
bioutils_collection/alignment_functions/phylogenetic_distance.py
bioutils_collection/alignment_functions/simple_alignment.py
bioutils_collection/alignment_functions/smith_waterman.py
bioutils_collection/annotation_functions/__init__.py
bioutils_collection/annotation_functions/annotation_statistics.py
bioutils_collection/annotation_functions/annotation_to_bed.py
bioutils_collection/annotation_functions/annotation_to_gff.py
bioutils_collection/annotation_functions/annotation_to_gtf.py
bioutils_collection/annotation_functions/filter_annotations.py
bioutils_collection/annotation_functions/merge_annotations.py
bioutils_collection/annotation_functions/parse_bed.py
bioutils_collection/annotation_functions/parse_gff.py
bioutils_collection/annotation_functions/parse_gtf.py
bioutils_collection/annotation_functions/parse_vcf.py
bioutils_collection/annotation_functions/sort_annotations.py
bioutils_collection/clustering_functions/__init__.py
bioutils_collection/clustering_functions/motif_clustering.py
bioutils_collection/data_validation/__init__.py
bioutils_collection/data_validation/validate_dna_sequence.py
bioutils_collection/data_validation/validate_protein_sequence.py
bioutils_collection/fasta_misc/__init__.py
bioutils_collection/fasta_misc/degenerate_primer_generator.py
bioutils_collection/fasta_misc/fasta_concat.py
bioutils_collection/fasta_misc/fasta_filter.py
bioutils_collection/fasta_misc/fasta_parser.py
bioutils_collection/fasta_misc/fasta_rename_headers.py
bioutils_collection/fasta_misc/fasta_reverse_complement.py
bioutils_collection/fasta_misc/fasta_split.py
bioutils_collection/fasta_misc/fasta_stats.py
bioutils_collection/fasta_misc/fasta_subsample.py
bioutils_collection/fasta_misc/fasta_to_dict.py
bioutils_collection/fasta_misc/fastq_to_fasta.py
bioutils_collection/fasta_misc/genbank_to_fasta.py
bioutils_collection/fasta_misc/generate_primers.py
bioutils_collection/fasta_misc/validate_fasta.py
bioutils_collection/fasta_misc/write_fasta.py
bioutils_collection/gc_functions/__init__.py
bioutils_collection/gc_functions/gc_content.py
bioutils_collection/gc_functions/gc_content_windows.py
bioutils_collection/gc_functions/gc_skew.py
bioutils_collection/gc_functions/sequence_gc_profile.py
bioutils_collection/motif_functions/__init__.py
bioutils_collection/motif_functions/find_motif_positions.py
bioutils_collection/motif_functions/generate_consensus_sequence.py
bioutils_collection/motif_functions/motif_search.py
bioutils_collection/motif_functions/sequence_pattern_match.py
bioutils_collection/repeat_functions/__init__.py
bioutils_collection/repeat_functions/palindromic_sequence_finder.py
bioutils_collection/repeat_functions/tandem_repeat_finder.py
bioutils_collection/restriction_functions/__init__.py
bioutils_collection/restriction_functions/restriction_site_finder.py
bioutils_collection/sequence_operations/__init__.py
bioutils_collection/sequence_operations/find_cpg_islands.py
bioutils_collection/sequence_operations/find_orfs.py
bioutils_collection/sequence_operations/remove_low_complexity_regions.py
bioutils_collection/sequence_operations/reverse_complement.py
bioutils_collection/sequence_operations/reverse_sequence.py
bioutils_collection/sequence_operations/sequence_complement.py
bioutils_collection/sequence_operations/sequence_masking.py
bioutils_collection/sequence_operations/sequence_quality_filter.py
bioutils_collection/sequence_operations/sequence_shuffling.py
bioutils_collection/sequence_operations/sequence_to_kmers.py
bioutils_collection/sequence_statistics/__init__.py
bioutils_collection/sequence_statistics/amino_acid_composition.py
bioutils_collection/sequence_statistics/calculate_isoelectric_point.py
bioutils_collection/sequence_statistics/calculate_molecular_weight.py
bioutils_collection/sequence_statistics/codon_adaptation_index.py
bioutils_collection/sequence_statistics/codon_usage_frequency.py
bioutils_collection/sequence_statistics/dinucleotide_frequency.py
bioutils_collection/sequence_statistics/effective_number_of_codons.py
bioutils_collection/sequence_statistics/kmer_frequency.py
bioutils_collection/sequence_statistics/melting_temperature.py
bioutils_collection/sequence_statistics/nucleotide_frequency.py
bioutils_collection/sequence_statistics/relative_synonymous_codon_usage.py
bioutils_collection/sequence_statistics/sequence_complexity.py
bioutils_collection/sequence_statistics/sequence_conservation.py
bioutils_collection/sequence_statistics/sequence_entropy.py
bioutils_collection/sequence_statistics/sequence_logo.py
bioutils_collection/sequence_statistics/sequence_statistics.py
bioutils_collection/translation_functions/__init__.py
bioutils_collection/translation_functions/rna_to_dna.py
bioutils_collection/translation_functions/transcribe_dna_to_rna.py
bioutils_collection/translation_functions/translate_dna_to_protein.py