lifton/__init__.py,sha256=ISkIm3iU0Ga77QvFos6HqoWR12q0BEsmuGI_TISYvns,24
lifton/align.py,sha256=HOo44scDMcFmBYuY9-QnVe2S5tV_XRcxK2_Bdr4XzZA,18658
lifton/annotation.py,sha256=-FU4F3RK-gn0E-qhOuN9dVMXpgttHgd0qQVdybTqq6c,50280
lifton/annotation_cache.py,sha256=bukRS1c2ouCHbjP2j8qr_3TucmAeK3PhFsJ8oXlSzLs,7680
lifton/annotation_conversion.py,sha256=e9BBF-HbEPx0NWbDQ_VDS5qL3Qc7ePH3yZXUv4yCO-c,3338
lifton/annotation_validator.py,sha256=iIKtNfXWkwvti1ytEPAc_QNnxf1cnGrdLizYbqTuEbQ,21246
lifton/cds_id_allocator.py,sha256=UDEzvWxM5E2Kuc8AUys8QJ5FAz4VqALYk0c3963wa5Y,6593
lifton/coding.py,sha256=YGIWML0bTzfIuqAAr2h2aMsUaqDXA85Sp2nrq0UaktI,17688
lifton/coreutils.py,sha256=-N3O_U1ZTsWAl-_EVh2GRRfQDqDF-O6GuQ9lc7bucpI,12186
lifton/cross_locus_rescue.py,sha256=wChzL-NN2fJpl_E5QLqD_kZBsIb7KRH9ipjVs36TL9w,23041
lifton/drop_ledger.py,sha256=2hNImpH7zYdETBm-GWAgQQ9mjUT8gyqJTbiey8XcOkk,7514
lifton/exceptions.py,sha256=Jisns8FBlQ0D1LmBNzyI9YcDdXfJCGK7WiJKX63XuGk,1252
lifton/extract_sequence.py,sha256=_8WE_LuMb8Qg_1kkQAQev6j-j9EMz0oz_elkvhirI3k,22856
lifton/get_id_fraction.py,sha256=SS_h6uSK80kS-wvIHhUZlPkFthrN9sidqhYD1eCWKMg,7671
lifton/gff3_validator.py,sha256=dpRh1s25_Kxtkr9GICGUWP6B1tfzt5VZyRG63MdWk7Y,95189
lifton/gffbase_adapter.py,sha256=TsxALilr7m1DwDF1JkWCIqAxtpSLcxFb4hcT93vF8lI,9015
lifton/intervals.py,sha256=O4GFKoBlDB-JBFXc3v8TmKU44BRNqeKPeHYzwH-Mu7c,919
lifton/lifton.py,sha256=cMEXKaft3-6W7F4miKUMCS7Q5vUrV7KmY3Lfp-D-SMg,124675
lifton/lifton_class.py,sha256=0PfWb8rBDCf-VHssYofVlhtP6sCQyLavL-u7mLFUWG0,77210
lifton/lifton_utils.py,sha256=hGBhotgHutJjBzPitSc26FoSpjaxHVoY-JyatXQYC9c,36607
lifton/locus_pipeline.py,sha256=1b-KTtLvsMA0-ReGRDcSWdQU3jq4ZZX7nDOxhMF6QvE,77604
lifton/logger.py,sha256=QOsmUW-BwF179HLj1Yt3-Zpu3J9K4cCLdrD7AVNaODI,2755
lifton/miniprot_pipeline.py,sha256=MjBunoWB7Y760SjX--63D5SHUR1cowycKhzNy8FPxDM,20909
lifton/miniprot_rescue.py,sha256=trVKy8-M57tTyLRubtWZhatMc4Ulimyb42DjeFnLrgE,60321
lifton/orf_completion.py,sha256=x550WfoVZgZlgwanFC9XAoLXht1iaIF1qjgeb62yIlQ,10432
lifton/output_transaction.py,sha256=q0RzHYiSWoNaEJPU2cUX8KKMMcmrtJBSKEGVyS1DgcY,11831
lifton/parallel.py,sha256=KIxrgbi2cWbTWp0wbaotXfV6qEccy2f_6BNIpj9-qpw,31773
lifton/parent_resolution.py,sha256=vQgv4pZ0VIelrCN-vdaXTSPwJ7sLm5Y9RpXUm6Z2aAQ,6992
lifton/protein_maximization.py,sha256=-ymPaK_4LRsDe53LgWW3KhKWjQTrARmFpwiDspLibXU,14712
lifton/reference_models.py,sha256=xCYFxb0_uY03hliziQSGOXuuNbaRExqSGZN-2VFRdwE,15436
lifton/run_evaluation.py,sha256=VZj76z1K8i7jJRiCi0P4n4wHaM_kduIG7PU4vQn0g0I,17339
lifton/run_liftoff.py,sha256=gw5Js-PlmoyDFX5u6T3YKuWPZxudX39qr986BsFJroU,34452
lifton/run_manifest.py,sha256=oHparsPSgvf-Wvxf-XZfTgp_SNF7r0YWYQmMTUZNCVc,31376
lifton/run_miniprot.py,sha256=sp0Gxa-p5r57UggO-KyK0HDjE3nsUKmg9xoOPyM1QEM,34658
lifton/sql_diag.py,sha256=gNt2IgjnyVDb6ybFinmQFDsCAAtYbaxcEFLgzKAyeXA,3603
lifton/stats.py,sha256=pqXaYjbfSpWSgNp8y8kOilxMYcFsALE2HkOrW8IjDLY,8541
lifton/tool_execution.py,sha256=jWzEnERytWkjNckmemtEmZPvj5x67tgdh2LHAki9tYs,13084
lifton/transl_except.py,sha256=RFW-AkiHra-qIuLzWjzhhdee04adZlktnvQJj_ry0L0,14492
lifton/variants.py,sha256=kWQaZ0MlDWu78WHZPCYCuSrwjeZgDKs7TqLzk1yR_88,6506
lifton/windowed_align.py,sha256=a9YlxrSXhxv1SrZGlh8Zw0pC5rp7_GdAOtSukPGWQpk,12056
lifton/gffbase/LICENSE,sha256=IU3NKuzfnZyp7pOl_5zZAAxNH0T-0JpT7t364OcPUB4,1077
lifton/gffbase/MIGRATION.md,sha256=wY4f9JV7_AFq3jdKkiIltDmjH7u2W_ViuGKE2_x5A6o,10670
lifton/gffbase/__init__.py,sha256=P7PWihp3yjKZ8Q_Ug1NdxVIEfwgjft41FhJpjvWopBo,2056
lifton/gffbase/_bins.py,sha256=Ubni7VrmZqbL-ydMPEgk1JugS48su5bE8VieQ1zeHe4,1177
lifton/gffbase/create_db.py,sha256=Z3qp-UT6MlUauDpMy-fVhw_pmGmjhi-xIwwYuuQ08Z4,3959
lifton/gffbase/dialect.py,sha256=YTkZMtpE2lX5zLYSK_VWbkrMVKJa9JIuzZwAd1OYcOI,1922
lifton/gffbase/exceptions.py,sha256=3kF6nDV5MaBiMtEU_iQ59BVpTQfudybeAC-Gki3FnaE,2012
lifton/gffbase/feature.py,sha256=HLTyVK5OqPeR1JmLEe1yGmkxkuCy3smkc8oAVDbc5pY,16286
lifton/gffbase/gffwriter.py,sha256=U3Yjm-r0QH8JXPQVF8dsSUTGjbgg9RTT9nkGUb2p4MA,3112
lifton/gffbase/helpers.py,sha256=FrCalzVY3mnfrAybCMJQdlh5GhfDNmwC2TN00aI5q20,917
lifton/gffbase/ingest.py,sha256=Xtt0aT7-aQUUYRJLFFxs2z0FjJgQVTyJlzeP4jziBig,30178
lifton/gffbase/interface.py,sha256=a9CkcHopA1REuJL7Cjw284b_BQUvEfkRHxZKPxxa2RA,70601
lifton/gffbase/iterators.py,sha256=H-PR1b-MwclK8cHEVrXPP5LspJf09os6JsfquYjP_JU,2834
lifton/gffbase/merge_criteria.py,sha256=OC9qIeDBAtYz_sFDr7uFnJwqYPb7by8xq4pogXgWWr8,2055
lifton/gffbase/parser.py,sha256=HBMhwe60BFmKsU61DdwU1fibwX6VWOCQXARMW0aZWhg,5132
lifton/gffbase/schema.py,sha256=DDAC1JdB10oOpIAlbTEXbTexVV4O_w4YmxHdzsz460Q,10246
lifton/gffbase/sqlite_export.py,sha256=5PGtRIr0_NKzKLos0H5IClq7zPYzdyQrrYBjsydl7SI,4469
lifton/gffbase/_pyfallback/__init__.py,sha256=vr7ZRt5akoAn1favmo5f8-rSE-z6hmAcITGydheq3Hs,480
lifton/gffbase/_pyfallback/attributes.py,sha256=i15I5shumYDcgW0glLj3OJM69OBPbOtLpiNc9YIrE9c,3608
lifton/gffbase/_pyfallback/parser.py,sha256=q4FqE104XwXeXXxxDPgdRSR3E3i6Gc0XgdDQoLytgSk,13793
lifton/gffbase/_rust/Cargo.lock,sha256=59wFRQOcruCzzkwlPMOlzdaFy9x4lJst33STREWr3iQ,6222
lifton/gffbase/_rust/Cargo.toml,sha256=KLVdVt0dRmKxw7h6ujRLeTAdKHCix3gP5WXqCzn5o2o,1064
lifton/gffbase/_rust/src/attributes.rs,sha256=uKAxPcOl9L933ojYpNjcSwFH97M4hn9qJWOUmJXAQNQ,7049
lifton/gffbase/_rust/src/dialect.rs,sha256=QJ3-3lVvBSYzH10g5buVMsF76FFl04HT_4QbAf9Eyj0,3323
lifton/gffbase/_rust/src/escape.rs,sha256=kBbbWHNVqI0AkGKA8cZVHXefmrFvry7Vkvq6qfpRFk4,1829
lifton/gffbase/_rust/src/lib.rs,sha256=pcUGY9qtE_HJ2bSZZBe5Pxgas-9r-xR-s6Zn14YpZPI,9678
lifton/gffbase/_rust/src/parser.rs,sha256=wmziSUKkUAQiui7V50oukE7K1UjqQtg8Q4xrkf1KBao,13883
lifton/gffbase/_rust/src/validate.rs,sha256=khXG17iDQ9Zlt2Tj4gmQzlbtx8nRTOkOBNr6WMEaLnU,11209
lifton/io/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
lifton/io/feature_serializer.py,sha256=z-GROrXrej6vchfpGboCnKA5eRcUeLiSh0EovUAdrek,9892
lifton/io/gff3_validator.py,sha256=WgmQ1KRHRZN30tojIz9Myu-NwTX5Byc9JxoPWU6a7_Q,12024
lifton/io/gff3_writer.py,sha256=B3Jz4put6juI4gTR_0r22ZHNsLBeR3lRsttJd1ip6nw,7985
lifton/io/ncbi_gff3_spec.py,sha256=01PZcJOP2NgXigGS3j2fU5xtNeuDeTrSCCYU9qXRtxo,1464
lifton/liftoff/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
lifton/liftoff/align_features.py,sha256=frBg5YU0pJkaRervTOHLEkwcUXlNBgbbcLdmuuP_67k,33952
lifton/liftoff/aligned_seg.py,sha256=35ECVkEZ_QNyPJF-Nk2Nbp8iXFy_tEZu_wVuisWWb4s,597
lifton/liftoff/extract_features.py,sha256=rqhzIrB2hlF0yfMnv0OQ2G0GWaoFkv_dxQO6Vv28afw,20549
lifton/liftoff/feature_hierarchy.py,sha256=9M9V2bEAdBqYw14_koyzCi1wIyxovwy3Fqk1uVfCIPg,190
lifton/liftoff/find_best_mapping.py,sha256=MusAnbSNcBbo_GKdI5fvOqom4z6ZUejExFrnfkR3PME,24478
lifton/liftoff/fix_overlapping_features.py,sha256=Es0dj5KNGu16ytrxaOYhNa6izPG5bd-rKVsO6blvwA0,9361
lifton/liftoff/inmemory_emitter.py,sha256=kFVDlsx3ieenfkMfghCIcFrgrU6LMxhE1f9uSBdOwFI,3580
lifton/liftoff/lift_features.py,sha256=AYKUBH3T1uWyAkrKxBrvp0w5YchRAHPs249cG9UftMI,6144
lifton/liftoff/liftoff_main.py,sha256=RdkRQsDjfoUd5UXvsZx8_5nrYvuIvp44Ff4o2BOTWCw,18490
lifton/liftoff/liftoff_utils.py,sha256=LNyYOokgoMelqKjUl2GO6swaXQcBoXfzCFZoO23cWlI,4032
lifton/liftoff/liftover_types.py,sha256=YWlQ8GyfUs8Bh0UhYJIeNh9ynl1AUn9rWF1BTuzRoXA,5222
lifton/liftoff/merge_lifted_features.py,sha256=GoxeonFnUK7LYypJmJtX4szDCfQafRDDF71rliY6ciM,3945
lifton/liftoff/native_align.py,sha256=pFmCy3E-cXYoQDdY5Gyw_jdmjDzWdb0tjeNW_31dgzY,9026
lifton/liftoff/new_feature.py,sha256=qlaCSvNETMuJIRPUPqlxVNV2BHgbthngGPf513u7wck,372
lifton/liftoff/parallel_lift.py,sha256=q9NfLwUumenJyrukae0NT_LaK9ub55RMaD0cDWnntGk,6829
lifton/liftoff/polish.py,sha256=5PIOVSAVcr83hCAAVTem95qyp49huOEje2qOPhe1xWY,14008
lifton/liftoff/write_new_gff.py,sha256=hfFBGcpWFqD9vdwTQPVCmlS1aR5PaZA3vDnz4x71UHI,11812
lifton/native_bindings/__init__.py,sha256=Oo0R-QPyQHR558imVFVzgIFVf7CWAP5VD8NFTsS2kDM,978
lifton/native_bindings/minimap_facade.py,sha256=aYQfk5CBSLN1sn1XINN6eygluJDc3ZLBe2qKb5__6fg,6305
lifton/native_bindings/miniprot_facade.py,sha256=ulCBXm6YNgcNnAlK8v-3fH3fWvsRo-IPjdRARYJs_V0,14569
lifton/native_bindings/types.py,sha256=DCxss9q7NwFiL4Ic6wlrfGpKLrmpbnIOtYW-vI4anuQ,2924
lifton-1.0.14.dist-info/licenses/LICENSE,sha256=yOROdlbE-pyra5WnmWokHe6wvG0zcaqzVAB8H7EzeC8,34599
lifton-1.0.14.dist-info/METADATA,sha256=01xzN5OulU-Q0rhpYQEHSR3QbJuzA4q_aDODbsxPrNg,38964
lifton-1.0.14.dist-info/WHEEL,sha256=YVMoNqKzERt-wjUZwJ33xBGAwnFl-4cqbYkTtWa4itE,91
lifton-1.0.14.dist-info/entry_points.txt,sha256=fr8IkLAbkpIzb285BuvlQvF28Ohd3dLVNBTXyRZf8Mc,90
lifton-1.0.14.dist-info/top_level.txt,sha256=zTjNfYPeV3wJr6iHLnmCTSSj2QkAEtIW6OCfAXoYqqE,7
lifton-1.0.14.dist-info/RECORD,,
