WORC
3.6.1
Introduction
Quick start guide
User Manual
Configuration
Radiomics Features
Additional functionality
FAQ
Developer documentation
Changelog
WORC Package
WORC
Docs
»
Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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V
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W
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__abstractmethods__ (WORC.classification.SearchCV.BaseSearchCV attribute)
(WORC.classification.SearchCV.BaseSearchCVJoblib attribute)
(WORC.classification.SearchCV.BaseSearchCVSMAC attribute)
(WORC.classification.SearchCV.BaseSearchCVfastr attribute)
(WORC.classification.SearchCV.Ensemble attribute)
(WORC.classification.SearchCV.GridSearchCVJoblib attribute)
(WORC.classification.SearchCV.GridSearchCVfastr attribute)
(WORC.classification.SearchCV.GuidedSearchCVSMAC attribute)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib attribute)
(WORC.classification.SearchCV.RandomizedSearchCVfastr attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.detectors.detectors.BigrClusterDetector attribute)
(WORC.detectors.detectors.CsvDetector attribute)
(WORC.detectors.detectors.DebugDetector attribute)
(WORC.detectors.detectors.HostnameDetector attribute)
(WORC.detectors.detectors.LinuxDetector attribute)
(WORC.detectors.detectors.SnelliusClusterDetector attribute)
(WORC.detectors.detectors.WORCDirectoryDetector attribute)
(WORC.featureprocessing.ICCThreshold.ICCThreshold attribute)
(WORC.featureprocessing.Relief.SelectMulticlassRelief attribute)
(WORC.featureprocessing.SelectGroups.SelectGroups attribute)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.EvaluateValidator attribute)
(WORC.validators.preflightcheck.InvalidLabelsValidator attribute)
(WORC.validators.preflightcheck.MinSubjectsValidator attribute)
(WORC.validators.preflightcheck.SamplesWarning attribute)
(WORC.validators.preflightcheck.SimpleValidator attribute)
__dict__ (WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
(WORC.classification.AdvancedSampler.boolean_uniform attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.classification.ObjectSampler.ObjectSampler attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.facade.helpers.configbuilder.ConfigBuilder attribute)
(WORC.facade.simpleworc.SimpleWORC attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute)
(WORC.featureprocessing.Preprocessor.Preprocessor attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Inference.Inference attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
(WORC.tools.fingerprinting.Fingerprinter attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.ValidatorsFactory attribute)
__init__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
(WORC.WORC.Tools method)
(WORC.WORC.WORC method)
(WORC.classification.AdvancedSampler.boolean_uniform method)
(WORC.classification.AdvancedSampler.discrete_uniform method)
(WORC.classification.AdvancedSampler.exp_uniform method)
(WORC.classification.AdvancedSampler.log_uniform method)
(WORC.classification.ObjectSampler.ObjectSampler method)
(WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
(WORC.classification.SearchCV.GridSearchCVJoblib method)
(WORC.classification.SearchCV.GridSearchCVfastr method)
(WORC.classification.SearchCV.GuidedSearchCVSMAC method)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib method)
(WORC.classification.SearchCV.RandomizedSearchCVfastr method)
(WORC.detectors.detectors.CsvDetector method)
(WORC.detectors.detectors.HostnameDetector method)
(WORC.facade.basicworc.BasicWORC method)
(WORC.facade.helpers.configbuilder.ConfigBuilder method)
(WORC.facade.helpers.exceptions.InvalidCsvFileException method)
(WORC.facade.helpers.exceptions.InvalidOrderException method)
(WORC.facade.helpers.exceptions.NoFeaturesFoundException method)
(WORC.facade.helpers.exceptions.NoImagesFoundException method)
(WORC.facade.helpers.exceptions.NoMasksFoundException method)
(WORC.facade.helpers.exceptions.NoSegmentationsFoundException method)
(WORC.facade.helpers.exceptions.PathNotFoundException method)
(WORC.facade.simpleworc.SimpleWORC method)
(WORC.featureprocessing.ICCThreshold.ICCThreshold method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method)
(WORC.featureprocessing.Preprocessor.Preprocessor method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.Scalers.WORCScaler method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)
(WORC.processing.classes.switch method)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Inference.Inference method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
(WORC.tools.fingerprinting.Fingerprinter method)
__iter__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
(WORC.processing.classes.switch method)
__len__() (WORC.classification.AdvancedSampler.AdvancedSampler method)
__module__ (WORC.addexceptions.WORCAssertionError attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
(WORC.addexceptions.WORCError attribute)
(WORC.addexceptions.WORCIOError attribute)
(WORC.addexceptions.WORCIndexError attribute)
(WORC.addexceptions.WORCKeyError attribute)
(WORC.addexceptions.WORCNotImplementedError attribute)
(WORC.addexceptions.WORCTypeError attribute)
(WORC.addexceptions.WORCValueError attribute)
(WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.classification.AdvancedSampler.boolean_uniform attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.classification.ObjectSampler.ObjectSampler attribute)
(WORC.classification.SearchCV.BaseSearchCV attribute)
(WORC.classification.SearchCV.BaseSearchCVJoblib attribute)
(WORC.classification.SearchCV.BaseSearchCVSMAC attribute)
(WORC.classification.SearchCV.BaseSearchCVfastr attribute)
(WORC.classification.SearchCV.Ensemble attribute)
(WORC.classification.SearchCV.GridSearchCVJoblib attribute)
(WORC.classification.SearchCV.GridSearchCVfastr attribute)
(WORC.classification.SearchCV.GuidedSearchCVSMAC attribute)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib attribute)
(WORC.classification.SearchCV.RandomizedSearchCVfastr attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.detectors.detectors.BigrClusterDetector attribute)
(WORC.detectors.detectors.CsvDetector attribute)
(WORC.detectors.detectors.DebugDetector attribute)
(WORC.detectors.detectors.HostnameDetector attribute)
(WORC.detectors.detectors.LinuxDetector attribute)
(WORC.detectors.detectors.SnelliusClusterDetector attribute)
(WORC.detectors.detectors.WORCDirectoryDetector attribute)
(WORC.facade.basicworc.BasicWORC attribute)
(WORC.facade.helpers.configbuilder.ConfigBuilder attribute)
(WORC.facade.helpers.exceptions.InvalidCsvFileException attribute)
(WORC.facade.helpers.exceptions.InvalidOrderException attribute)
(WORC.facade.helpers.exceptions.NoFeaturesFoundException attribute)
(WORC.facade.helpers.exceptions.NoImagesFoundException attribute)
(WORC.facade.helpers.exceptions.NoMasksFoundException attribute)
(WORC.facade.helpers.exceptions.NoSegmentationsFoundException attribute)
(WORC.facade.helpers.exceptions.PathNotFoundException attribute)
(WORC.facade.simpleworc.SimpleWORC attribute)
(WORC.featureprocessing.ICCThreshold.ICCThreshold attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute)
(WORC.featureprocessing.Preprocessor.Preprocessor attribute)
(WORC.featureprocessing.Relief.SelectMulticlassRelief attribute)
(WORC.featureprocessing.Scalers.LogStandardScaler attribute)
(WORC.featureprocessing.Scalers.RobustStandardScaler attribute)
(WORC.featureprocessing.Scalers.WORCScaler attribute)
(WORC.featureprocessing.SelectGroups.SelectGroups attribute)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals attribute)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold attribute)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Inference.Inference attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
(WORC.tools.fingerprinting.Fingerprinter attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.EvaluateValidator attribute)
(WORC.validators.preflightcheck.InvalidLabelsValidator attribute)
(WORC.validators.preflightcheck.MinSubjectsValidator attribute)
(WORC.validators.preflightcheck.SamplesWarning attribute)
(WORC.validators.preflightcheck.SimpleValidator attribute)
(WORC.validators.preflightcheck.ValidatorsFactory attribute)
__weakref__ (WORC.addexceptions.WORCError attribute)
(WORC.WORC.Tools attribute)
(WORC.WORC.WORC attribute)
(WORC.addexceptions.WORCIOError attribute)
(WORC.classification.AdvancedSampler.AdvancedSampler attribute)
(WORC.classification.AdvancedSampler.boolean_uniform attribute)
(WORC.classification.AdvancedSampler.discrete_uniform attribute)
(WORC.classification.AdvancedSampler.exp_uniform attribute)
(WORC.classification.AdvancedSampler.log_uniform attribute)
(WORC.classification.ObjectSampler.ObjectSampler attribute)
(WORC.detectors.detectors.AbstractDetector attribute)
(WORC.facade.helpers.configbuilder.ConfigBuilder attribute)
(WORC.facade.helpers.exceptions.InvalidCsvFileException attribute)
(WORC.facade.helpers.exceptions.InvalidOrderException attribute)
(WORC.facade.helpers.exceptions.NoFeaturesFoundException attribute)
(WORC.facade.helpers.exceptions.NoImagesFoundException attribute)
(WORC.facade.helpers.exceptions.NoMasksFoundException attribute)
(WORC.facade.helpers.exceptions.NoSegmentationsFoundException attribute)
(WORC.facade.helpers.exceptions.PathNotFoundException attribute)
(WORC.facade.simpleworc.SimpleWORC attribute)
(WORC.featureprocessing.Imputer.Imputer attribute)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper attribute)
(WORC.featureprocessing.Preprocessor.Preprocessor attribute)
(WORC.processing.classes.switch attribute)
(WORC.tools.Elastix.Elastix attribute)
(WORC.tools.Evaluate.Evaluate attribute)
(WORC.tools.Inference.Inference attribute)
(WORC.tools.Slicer.Slicer attribute)
(WORC.tools.Transformix.Transformix attribute)
(WORC.tools.fingerprinting.Fingerprinter attribute)
(WORC.validators.preflightcheck.AbstractValidator attribute)
(WORC.validators.preflightcheck.ValidatorsFactory attribute)
A
AbstractDetector (class in WORC.detectors.detectors)
AbstractValidator (class in WORC.validators.preflightcheck)
add_ComBat() (WORC.WORC.WORC method)
add_config_overrides() (WORC.facade.simpleworc.SimpleWORC method)
add_elastix() (WORC.WORC.WORC method)
add_elastix_sourcesandsinks() (WORC.WORC.WORC method)
add_evaluation() (WORC.facade.simpleworc.SimpleWORC method)
(WORC.WORC.WORC method)
add_feature_calculator() (WORC.WORC.WORC method)
add_fingerprinter() (WORC.WORC.WORC method)
add_parameters_to_grid() (in module WORC.classification.trainclassifier)
add_preprocessing() (WORC.WORC.WORC method)
add_segmentix() (WORC.WORC.WORC method)
add_tools() (WORC.WORC.WORC method)
addchangeorder() (WORC.tools.Elastix.Elastix method)
AdvancedSampler (class in WORC.classification.AdvancedSampler)
B
BaseSearchCV (class in WORC.classification.SearchCV)
BaseSearchCVfastr (class in WORC.classification.SearchCV)
BaseSearchCVJoblib (class in WORC.classification.SearchCV)
BaseSearchCVSMAC (class in WORC.classification.SearchCV)
BasicWORC (class in WORC.facade.basicworc)
bbox_2D() (in module WORC.plotting.plot_images)
bias_correct_image() (in module WORC.processing.preprocessing)
BigrClusterDetector (class in WORC.detectors.detectors)
binary_classification() (WORC.facade.simpleworc.SimpleWORC method)
boolean_uniform (class in WORC.classification.AdvancedSampler)
build() (WORC.WORC.WORC method)
build_config() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
build_smac_config() (in module WORC.classification.smac)
build_training() (WORC.WORC.WORC method)
C
calc_pvalue() (in module WORC.statistics.delong)
check_image_orientation() (in module WORC.processing.helpers)
check_multimetric_scoring() (in module WORC.classification.metrics)
check_scoring() (in module WORC.classification.metrics)
chunks() (in module WORC.classification.SearchCV)
chunksdict() (in module WORC.classification.SearchCV)
clip_image() (in module WORC.processing.preprocessing)
coarse_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
ComBat() (in module WORC.featureprocessing.ComBat)
ComBatMatlab() (in module WORC.featureprocessing.ComBat)
ComBatPython() (in module WORC.featureprocessing.ComBat)
combine_multiple_estimators() (in module WORC.plotting.plot_estimator_performance)
compute_confidence() (in module WORC.plotting.compute_CI)
compute_confidence_bootstrap() (in module WORC.plotting.compute_CI)
compute_confidence_logit() (in module WORC.plotting.compute_CI)
compute_ground_truth_statistics() (in module WORC.statistics.delong)
compute_midrank() (in module WORC.statistics.delong)
compute_midrank_weight() (in module WORC.statistics.delong)
compute_statistics() (in module WORC.plotting.plot_estimator_performance)
ConfigBuilder (class in WORC.facade.helpers.configbuilder)
construct_classifier() (in module WORC.classification.construct_classifier)
construct_SVM() (in module WORC.classification.construct_classifier)
convert_config_pyradiomics() (in module WORC.IOparser.file_io)
convert_features_ICC_threshold() (in module WORC.featureprocessing.ICCThreshold)
convert_PREDICT() (in module WORC.featureprocessing.FeatureConverter)
convert_pyradiomics() (in module WORC.featureprocessing.FeatureConverter)
convert_pyradiomics_featurevector() (in module WORC.featureprocessing.FeatureConverter)
convert_radiomix_features() (in module WORC.facade.helpers.processing)
count_num_subjects() (WORC.facade.simpleworc.SimpleWORC method)
count_parameters() (in module WORC.plotting.plot_barchart)
create_bbox() (WORC.tools.Elastix.Elastix method)
create_ensemble() (WORC.classification.SearchCV.BaseSearchCV method)
create_links_Addon() (WORC.tools.Evaluate.Evaluate method)
create_links_Standalone() (WORC.tools.Evaluate.Evaluate method)
create_network() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Inference.Inference method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
create_param_grid() (in module WORC.classification.construct_classifier)
create_random_features() (in module WORC.exampledata.create_example_data)
createfixedsplits() (in module WORC.classification.createfixedsplits)
(in module WORC.tools.createfixedsplits)
crossval() (in module WORC.classification.crossval)
CsvDetector (class in WORC.detectors.detectors)
curve_thresholding() (in module WORC.plotting.plot_ROC)
custom_config_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
D
DebugDetector (class in WORC.detectors.detectors)
decision_function() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
Decomposition() (in module WORC.featureprocessing.Decomposition)
defaultconfig() (WORC.WORC.WORC method)
delete_cc_para() (in module WORC.classification.fitandscore)
delete_nonestimator_parameters() (in module WORC.classification.fitandscore)
delong_roc_test() (in module WORC.statistics.delong)
delong_roc_variance() (in module WORC.statistics.delong)
dilate_contour() (in module WORC.processing.segmentix)
discrete_uniform (class in WORC.classification.AdvancedSampler)
do_detection() (WORC.detectors.detectors.AbstractDetector method)
do_validation() (WORC.validators.preflightcheck.AbstractValidator method)
download_HeadAndNeck() (in module WORC.exampledata.datadownloader)
download_project() (in module WORC.exampledata.datadownloader)
download_subject() (in module WORC.exampledata.datadownloader)
E
Elastix (class in WORC.tools.Elastix)
Ensemble (class in WORC.classification.SearchCV)
estimator_scoring_overrides() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
Evaluate (class in WORC.tools.Evaluate)
EvaluateValidator (class in WORC.validators.preflightcheck)
execute() (WORC.facade.basicworc.BasicWORC method)
(WORC.WORC.WORC method)
(WORC.facade.simpleworc.SimpleWORC method)
(WORC.tools.Elastix.Elastix method)
(WORC.tools.Evaluate.Evaluate method)
(WORC.tools.Slicer.Slicer method)
(WORC.tools.Transformix.Transformix method)
(WORC.tools.fingerprinting.Fingerprinter method)
exp_uniform (class in WORC.classification.AdvancedSampler)
export_hyper_params_to_latex() (in module WORC.export.hyper_params_exporter)
extract_boundary() (in module WORC.plotting.plot_images)
ExtractNLargestBlobsn() (in module WORC.processing.ExtractNLargestBlobsn)
F
f1_weighted_predictproba() (in module WORC.classification.metrics)
factor_validators() (WORC.validators.preflightcheck.ValidatorsFactory static method)
fastDeLong() (in module WORC.statistics.delong)
FeatureConverter() (in module WORC.featureprocessing.FeatureConverter)
features_from_radiomix_xlsx() (WORC.facade.simpleworc.SimpleWORC method)
features_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method)
find_exampledatadir() (in module WORC.tests.test_helpers)
find_testdatadir() (in module WORC.tests.test_helpers)
findlabeldata() (in module WORC.processing.label_processing)
Fingerprinter (class in WORC.tools.fingerprinting)
fit() (WORC.classification.ObjectSampler.ObjectSampler method)
(WORC.classification.SearchCV.GridSearchCVJoblib method)
(WORC.classification.SearchCV.GridSearchCVfastr method)
(WORC.classification.SearchCV.GuidedSearchCVSMAC method)
(WORC.classification.SearchCV.RandomizedSearchCVJoblib method)
(WORC.classification.SearchCV.RandomizedSearchCVfastr method)
(WORC.featureprocessing.ICCThreshold.ICCThreshold method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method)
(WORC.featureprocessing.Preprocessor.Preprocessor method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.Scalers.LogStandardScaler method)
(WORC.featureprocessing.Scalers.RobustStandardScaler method)
(WORC.featureprocessing.Scalers.WORCScaler method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)
fit_and_score() (in module WORC.classification.fitandscore)
fit_thresholds() (in module WORC.plotting.plot_estimator_performance)
flatten_object() (in module WORC.plotting.plot_ranked_scores)
fullprint() (WORC.facade.helpers.configbuilder.ConfigBuilder method)
G
generate_feature_boxplots() (in module WORC.plotting.plot_boxplot_features)
generate_performance_boxplots() (in module WORC.plotting.plot_boxplot_performance)
get_ring() (in module WORC.processing.segmentix)
getparametermap() (WORC.tools.Elastix.Elastix method)
GridSearchCVfastr (class in WORC.classification.SearchCV)
GridSearchCVJoblib (class in WORC.classification.SearchCV)
guided_search_parameters() (in module WORC.classification.parameter_optimization)
GuidedSearchCVSMAC (class in WORC.classification.SearchCV)
H
HostnameDetector (class in WORC.detectors.detectors)
I
ICC() (in module WORC.classification.metrics)
ICC_anova() (in module WORC.classification.metrics)
ICCThreshold (class in WORC.featureprocessing.ICCThreshold)
images_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method)
Imputer (class in WORC.featureprocessing.Imputer)
Inference (class in WORC.tools.Inference)
init_ADASYN() (WORC.classification.ObjectSampler.ObjectSampler method)
init_BorderlineSMOTE() (WORC.classification.ObjectSampler.ObjectSampler method)
init_NearMiss() (WORC.classification.ObjectSampler.ObjectSampler method)
init_NeighbourhoodCleaningRule() (WORC.classification.ObjectSampler.ObjectSampler method)
init_RandomOverSampling() (WORC.classification.ObjectSampler.ObjectSampler method)
init_RandomUnderSampling() (WORC.classification.ObjectSampler.ObjectSampler method)
init_SMOTE() (WORC.classification.ObjectSampler.ObjectSampler method)
init_SMOTEENN() (WORC.classification.ObjectSampler.ObjectSampler method)
init_SMOTETomek() (WORC.classification.ObjectSampler.ObjectSampler method)
InvalidCsvFileException
InvalidLabelsValidator (class in WORC.validators.preflightcheck)
InvalidOrderException
inverse_transform() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
L
labels_from_this_file() (WORC.facade.simpleworc.SimpleWORC method)
linstretch() (in module WORC.plotting.linstretch)
LinuxDetector (class in WORC.detectors.detectors)
load_config() (in module WORC.IOparser.config_io_classifier)
(in module WORC.IOparser.config_WORC)
(in module WORC.IOparser.config_io_PyRadiomics)
(in module WORC.IOparser.config_io_combat)
(in module WORC.IOparser.config_preprocessing)
(in module WORC.IOparser.config_segmentix)
load_config_XNAT() (in module WORC.processing.label_processing)
load_data() (in module WORC.IOparser.file_io)
load_features() (in module WORC.IOparser.file_io)
load_label_csv() (in module WORC.processing.label_processing)
load_label_txt() (in module WORC.processing.label_processing)
load_label_XNAT() (in module WORC.processing.label_processing)
load_labels() (in module WORC.processing.label_processing)
log_uniform (class in WORC.classification.AdvancedSampler)
LogStandardScaler (class in WORC.featureprocessing.Scalers)
LOO_cross_validation() (in module WORC.classification.crossval)
M
main() (in module WORC.plotting.plot_barchart)
(in module WORC.plotting.plot_ROC)
(in module WORC.plotting.plot_estimator_performance)
(in module WORC.plotting.plot_ranked_scores)
(in module WORC.plotting.plotminmaxresponse)
(in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
(in module WORC.tests.WORCTutorialSimple_unittest_multiclass)
(in module WORC.tests.WORCTutorialSimple_unittest_regression)
manhattan_importance() (in module WORC.plotting.plot_pvalues_features)
mask_contour() (in module WORC.processing.segmentix)
masks_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method)
match() (WORC.processing.classes.switch method)
MinSubjectsValidator (class in WORC.validators.preflightcheck)
multi_class_auc() (in module WORC.classification.metrics)
multi_class_auc_score() (in module WORC.classification.metrics)
multi_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method)
multiclass_classification() (WORC.facade.simpleworc.SimpleWORC method)
N
nocrossval() (in module WORC.classification.crossval)
NoFeaturesFoundException
NoImagesFoundException
NoMasksFoundException
normalize_image() (in module WORC.processing.preprocessing)
NoSegmentationsFoundException
O
ObjectSampler (class in WORC.classification.ObjectSampler)
OneHotEncoderWrapper (class in WORC.featureprocessing.OneHotEncoderWrapper)
P
pairwise_auc() (in module WORC.classification.metrics)
paracheck() (in module WORC.plotting.plot_barchart)
PathNotFoundException
performance_multilabel() (in module WORC.classification.metrics)
performance_singlelabel() (in module WORC.classification.metrics)
plot_barchart() (in module WORC.plotting.plot_barchart)
plot_bars() (in module WORC.plotting.plot_barchart)
plot_boxplot_features() (in module WORC.plotting.plot_boxplot_features)
plot_errors() (in module WORC.plotting.plot_errors)
plot_estimator_performance() (in module WORC.plotting.plot_estimator_performance)
plot_hyperparameters() (in module WORC.plotting.plot_hyperparameters)
plot_im_and_overlay() (in module WORC.plotting.plot_images)
plot_PRC_CIc() (in module WORC.plotting.plot_ROC)
plot_ranked_images() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_percentages() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_posteriors() (in module WORC.plotting.plot_ranked_scores)
plot_ranked_scores() (in module WORC.plotting.plot_ranked_scores)
plot_ROC() (in module WORC.plotting.plot_ROC)
plot_ROC_CIc() (in module WORC.plotting.plot_ROC)
plot_single_PRC() (in module WORC.plotting.plot_ROC)
plot_single_ROC() (in module WORC.plotting.plot_ROC)
predict() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
predict_labels() (WORC.facade.simpleworc.SimpleWORC method)
predict_log_proba() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
predict_proba() (WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
preprocess() (in module WORC.processing.preprocessing)
(WORC.classification.SearchCV.BaseSearchCV method)
Preprocessor (class in WORC.featureprocessing.Preprocessor)
process_fit() (WORC.classification.SearchCV.BaseSearchCV method)
R
random_search_parameters() (in module WORC.classification.parameter_optimization)
random_split_cross_validation() (in module WORC.classification.crossval)
RandomizedSearchCVfastr (class in WORC.classification.SearchCV)
RandomizedSearchCVJoblib (class in WORC.classification.SearchCV)
refit_and_score() (WORC.classification.SearchCV.BaseSearchCV method)
regression() (WORC.facade.simpleworc.SimpleWORC method)
replacenan() (in module WORC.classification.fitandscore)
resample_image() (in module WORC.processing.helpers)
rms_score() (in module WORC.classification.SearchCV)
RobustStandardScaler (class in WORC.featureprocessing.Scalers)
rvs() (WORC.classification.AdvancedSampler.boolean_uniform method)
(WORC.classification.AdvancedSampler.discrete_uniform method)
(WORC.classification.AdvancedSampler.exp_uniform method)
(WORC.classification.AdvancedSampler.log_uniform method)
S
SamplesWarning (class in WORC.validators.preflightcheck)
sar_score() (in module WORC.classification.SearchCV)
save_config() (WORC.WORC.WORC method)
score() (WORC.classification.SearchCV.BaseSearchCV method)
segmentations_from_this_directory() (WORC.facade.simpleworc.SimpleWORC method)
segmentix() (in module WORC.processing.segmentix)
SelectGroups (class in WORC.featureprocessing.SelectGroups)
SelectIndividuals (class in WORC.featureprocessing.SelectIndividuals)
SelectMulticlassRelief (class in WORC.featureprocessing.Relief)
selfeat_variance() (in module WORC.featureprocessing.VarianceThreshold)
semantics_from_this_file() (WORC.facade.simpleworc.SimpleWORC method)
set() (WORC.tools.Evaluate.Evaluate method)
(WORC.WORC.WORC method)
(WORC.tools.Slicer.Slicer method)
set_fixed_splits() (WORC.facade.simpleworc.SimpleWORC method)
set_image_types() (WORC.facade.simpleworc.SimpleWORC method)
set_multicore_execution() (WORC.facade.simpleworc.SimpleWORC method)
set_tmpdir() (WORC.facade.simpleworc.SimpleWORC method)
SimpleValidator (class in WORC.validators.preflightcheck)
SimpleWORC (class in WORC.facade.simpleworc)
single_class_relief() (WORC.featureprocessing.Relief.SelectMulticlassRelief method)
sink_data() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
Slicer (class in WORC.tools.Slicer)
slicer() (in module WORC.plotting.plot_images)
SnelliusClusterDetector (class in WORC.detectors.detectors)
source_data() (in module WORC.resources.fastr_tests.CalcFeatures_test)
(in module WORC.resources.fastr_tests.elastix_test)
(in module WORC.resources.fastr_tests.segmentix_test)
StatisticalTestFeatures() (in module WORC.featureprocessing.StatisticalTestFeatures)
StatisticalTestThreshold (class in WORC.featureprocessing.StatisticalTestThreshold)
survival() (WORC.facade.simpleworc.SimpleWORC method)
switch (class in WORC.processing.classes)
Synthetictest() (in module WORC.featureprocessing.ComBat)
T
test() (in module WORC.featureprocessing.OneHotEncoderWrapper)
(in module WORC.featureprocessing.Scalers)
(in module WORC.plotting.plot_boxplot_performance)
(in module WORC.tools.createfixedsplits)
test_combat() (in module WORC.tests.test_combat)
test_combat_fastr() (in module WORC.tests.test_combat)
test_iccthreshold() (in module WORC.tests.test_iccthreshold)
test_invalidlabelsvalidator_columnsubstring() (in module WORC.tests.test_validators)
test_invalidlabelsvalidator_patientcolumn() (in module WORC.tests.test_validators)
test_invalidlabelsvalidator_patientsubstring() (in module WORC.tests.test_validators)
test_invalidlabelsvalidator_validconfig() (in module WORC.tests.test_validators)
test_plot_errors() (in module WORC.tests.test_plot_errors)
test_RS_Ensemble() (in module WORC.classification.crossval)
Tools (class in WORC.WORC)
trainclassifier() (in module WORC.classification.trainclassifier)
transform() (WORC.classification.ObjectSampler.ObjectSampler method)
(WORC.classification.SearchCV.BaseSearchCV method)
(WORC.classification.SearchCV.Ensemble method)
(WORC.featureprocessing.ICCThreshold.ICCThreshold method)
(WORC.featureprocessing.Imputer.Imputer method)
(WORC.featureprocessing.OneHotEncoderWrapper.OneHotEncoderWrapper method)
(WORC.featureprocessing.Preprocessor.Preprocessor method)
(WORC.featureprocessing.Relief.SelectMulticlassRelief method)
(WORC.featureprocessing.Scalers.WORCScaler method)
(WORC.featureprocessing.SelectGroups.SelectGroups method)
(WORC.featureprocessing.SelectIndividuals.SelectIndividuals method)
(WORC.featureprocessing.StatisticalTestThreshold.StatisticalTestThreshold method)
(WORC.featureprocessing.VarianceThreshold.VarianceThresholdMean method)
Transformix (class in WORC.tools.Transformix)
transpose_image() (in module WORC.processing.helpers)
V
ValidatorsFactory (class in WORC.validators.preflightcheck)
VarianceThresholdMean (class in WORC.featureprocessing.VarianceThreshold)
W
WORC (class in WORC.WORC)
WORC.__init__ (module)
WORC.addexceptions (module)
WORC.classification (module)
WORC.classification.AdvancedSampler (module)
WORC.classification.construct_classifier (module)
WORC.classification.createfixedsplits (module)
WORC.classification.crossval (module)
WORC.classification.fitandscore (module)
WORC.classification.metrics (module)
WORC.classification.ObjectSampler (module)
WORC.classification.parameter_optimization (module)
WORC.classification.regressors (module)
WORC.classification.SearchCV (module)
WORC.classification.smac (module)
WORC.classification.trainclassifier (module)
WORC.detectors.detectors (module)
WORC.exampledata.create_example_data (module)
WORC.exampledata.datadownloader (module)
WORC.export.hyper_params_exporter (module)
WORC.facade (module)
WORC.facade.basicworc (module)
WORC.facade.helpers.configbuilder (module)
WORC.facade.helpers.exceptions (module)
WORC.facade.helpers.processing (module)
WORC.facade.simpleworc (module)
WORC.featureprocessing (module)
WORC.featureprocessing.ComBat (module)
WORC.featureprocessing.Decomposition (module)
WORC.featureprocessing.FeatureConverter (module)
WORC.featureprocessing.ICCThreshold (module)
WORC.featureprocessing.Imputer (module)
WORC.featureprocessing.OneHotEncoderWrapper (module)
WORC.featureprocessing.Preprocessor (module)
WORC.featureprocessing.Relief (module)
WORC.featureprocessing.Scalers (module)
WORC.featureprocessing.SelectGroups (module)
WORC.featureprocessing.SelectIndividuals (module)
WORC.featureprocessing.StatisticalTestFeatures (module)
WORC.featureprocessing.StatisticalTestThreshold (module)
WORC.featureprocessing.VarianceThreshold (module)
WORC.IOparser.config_io_classifier (module)
WORC.IOparser.config_io_combat (module)
WORC.IOparser.config_io_PyRadiomics (module)
WORC.IOparser.config_preprocessing (module)
WORC.IOparser.config_segmentix (module)
WORC.IOparser.config_WORC (module)
WORC.IOparser.file_io (module)
WORC.plotting (module)
WORC.plotting.compute_CI (module)
WORC.plotting.linstretch (module)
WORC.plotting.plot_barchart (module)
WORC.plotting.plot_boxplot_features (module)
WORC.plotting.plot_boxplot_performance (module)
WORC.plotting.plot_errors (module)
WORC.plotting.plot_estimator_performance (module)
WORC.plotting.plot_hyperparameters (module)
WORC.plotting.plot_images (module)
WORC.plotting.plot_pvalues_features (module)
WORC.plotting.plot_ranked_scores (module)
WORC.plotting.plot_ROC (module)
WORC.plotting.plotminmaxresponse (module)
WORC.processing.classes (module)
WORC.processing.ExtractNLargestBlobsn (module)
WORC.processing.helpers (module)
WORC.processing.label_processing (module)
WORC.processing.preprocessing (module)
WORC.processing.segmentix (module)
WORC.resources.fastr_tests.CalcFeatures_test (module)
WORC.resources.fastr_tests.elastix_test (module)
WORC.resources.fastr_tests.segmentix_test (module)
WORC.resources.fastr_tools (module)
WORC.statistics.delong (module)
WORC.tests.test_combat (module)
WORC.tests.test_helpers (module)
WORC.tests.test_iccthreshold (module)
WORC.tests.test_plot_errors (module)
WORC.tests.test_validators (module)
WORC.tests.WORCTutorialSimple_unittest_multiclass (module)
WORC.tests.WORCTutorialSimple_unittest_regression (module)
WORC.tools.createfixedsplits (module)
WORC.tools.Elastix (module)
WORC.tools.Evaluate (module)
WORC.tools.fingerprinting (module)
WORC.tools.Inference (module)
WORC.tools.Slicer (module)
WORC.tools.Transformix (module)
WORC.validators.preflightcheck (module)
WORC.WORC (module)
WORCAssertionError
WORCDirectoryDetector (class in WORC.detectors.detectors)
WORCError
WORCIndexError
WORCIOError
WORCKeyError
WORCNotImplementedError
WORCScaler (class in WORC.featureprocessing.Scalers)
WORCTypeError
WORCValueError