Subkey

Description

mask

If None, masks will not be used by segmentix. If a mask is supplied, should the mask be subtracted from the contour or multiplied.

segtype

If Ring, then a ring around the segmentation will be used as contour. If Dilate, the segmentation will be dilated per 2-D axial slice with a disc.

segradius

Define the radius of the ring or disc used if segtype is Ring or Dilate, respectively.

N_blobs

How many of the largest blobs are extracted from the segmentation. If None, no blob extraction is used.

fillholes

Determines whether hole filling will be used.

remove_small_objects

Determines whether small objects will be removed.

min_object_size

Minimum of objects in voxels to not be removed if small objects are removed