Subkey |
Description |
---|---|
mask |
If None, masks will not be used by segmentix. If a mask is supplied, should the mask be subtracted from the contour or multiplied. |
segtype |
If Ring, then a ring around the segmentation will be used as contour. If Dilate, the segmentation will be dilated per 2-D axial slice with a disc. |
segradius |
Define the radius of the ring or disc used if segtype is Ring or Dilate, respectively. |
N_blobs |
How many of the largest blobs are extracted from the segmentation. If None, no blob extraction is used. |
fillholes |
Determines whether hole filling will be used. |
remove_small_objects |
Determines whether small objects will be removed. |
min_object_size |
Minimum of objects in voxels to not be removed if small objects are removed |