Subkey |
Description |
---|---|
language |
Name of software implementation to use. |
batch |
Name of batch variable = variable to correct for. |
mod |
Name of moderation variable(s) = variables for which variation in features will be “preserverd”. |
par |
Either use the parametric (1) or non-parametric version (0) of ComBat. |
eb |
Either use the emperical Bayes (1) or simply mean shifting version (0) of ComBat. |
per_feature |
Either use ComBat for all features combined (0) or per feature (1), in which case a second feature equal to the single feature plus random noise will be added if eb=1 |
excluded_features |
Provide substrings of feature labels of features which should be excluded from ComBat. Recommended to use for features unaffected by the batch variable. |
matlab |
If using Matlab, path to Matlab executable. |