debug 0
image_analysis 1
num_cellclusters silhouette 3 10 1
num_voxelclusters 3
num_markers 3
num_channelPCA_components 3
num_outlinepoints 100
num_shapeclusters silhouette 3 6 1
precluster_sampling 0.07
precluster_threshold 10000
skip_empty_mask 1
reallocation_descent_rate 0.1
reallocation_quit_criterion 0.0001
num_of_reallocations 1
reallocation_avg_bg 1
zslices 0
recluster 0
glcm_angles [0]
glcm_distances [1]
run_outlinePCA 1
interior_cells_only 1
normalize_bg 1
zscore_norm 1
skip_texture 1
valid_cell_threshold 10
tSNE_all_preprocess none zscore blockwise_zscore
tSNE_all_ee default
tSNE_all_perplexity 35
tSNE_all_tSNEInitialization pca
tsne_all_svdsolver4pca full
cell_adj_parallel 0
cell_graph 1
cell_adj_dilation_itr 3
sprm_segeval_both 2
tSNE_texture_calculation_skip 1
tSNE_num_components 2
adj_matrix_delta 3
image_dimension 2D
apng_delay 100
subtype_thresh 0.1
