biopython<2.0,>=1.79
Click<9.0,>=8.0
gffutils<1.0,>=0.10
numpy<2.0,>=1.20
pandas<3.0,>=1.3
PyYAML<7.0,>=5.4
requests<3.0,>=2.25
simplejson<4.0,>=3.17
ratelimit<3.0,>=2.2
pyteomics<5.0,>=4.5
pybedtools<1.0,>=0.9
pyopenms<4.0,>=3.2
matplotlib<4.0,>=3.3
tqdm<5.0,>=4.60
pyahocorasick<2.0,>=1.4

[dev]
pytest<8.0,>=7.0
flake8<7.0,>=4.0
pytest-cov<5.0,>=3.0
