LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
images/PortPy-Figs_3.jpg
images/PortPy-Figs_4_data.jpg
images/PortPy-full-pipeline.jpg
images/PortPy_logo.jpg
portpy/__init__.py
portpy.egg-info/PKG-INFO
portpy.egg-info/SOURCES.txt
portpy.egg-info/dependency_links.txt
portpy.egg-info/entry_points.txt
portpy.egg-info/requires.txt
portpy.egg-info/top_level.txt
portpy/ai/__init__.py
portpy/ai/infer_runner.py
portpy/ai/test.py
portpy/ai/train.py
portpy/ai/train_upkern.py
portpy/ai/data/__init__.py
portpy/ai/data/base_dataset.py
portpy/ai/data/beamletdose3d_dataset.py
portpy/ai/data/dosepred3d_dataset.py
portpy/ai/data/image_folder.py
portpy/ai/data/single_dataset.py
portpy/ai/data/template_dataset.py
portpy/ai/inference/__init__.py
portpy/ai/inference/gpu_resample.py
portpy/ai/inference/inf_matrix_predictor.py
portpy/ai/inference/patient_grid_geometry.py
portpy/ai/inference/ray_geometry.py
portpy/ai/models/__init__.py
portpy/ai/models/attention_resunet3d.py
portpy/ai/models/base_model.py
portpy/ai/models/beamletdose3d_model.py
portpy/ai/models/doseprediction3d_model.py
portpy/ai/models/networks3d.py
portpy/ai/models/test_model.py
portpy/ai/models/unet3d.py
portpy/ai/options/__init__.py
portpy/ai/options/base_options.py
portpy/ai/options/test_options.py
portpy/ai/options/train_options.py
portpy/ai/preprocess/beamlet_preprocess_utils.py
portpy/ai/preprocess/beamletdose_preprocess.py
portpy/ai/preprocess/build_apred_batch.py
portpy/ai/preprocess/data_preprocess.py
portpy/ai/preprocess/pred_dose_to_original_portpy.py
portpy/ai/preprocess/predict_using_model.py
portpy/ai/statistics/compute_dvh_stats.py
portpy/ai/util/__init__.py
portpy/ai/util/html.py
portpy/ai/util/image_pool.py
portpy/ai/util/util.py
portpy/ai/util/visualizer.py
portpy/config_files/__init__.py
portpy/config_files/clinical_criteria/Default/Lung_2Gy_30Fx.json
portpy/config_files/clinical_criteria/Default/Paraspinal_1Fx.json
portpy/config_files/clinical_criteria/Default/Prostate_26Fx.json
portpy/config_files/clinical_criteria/Default/Prostate_5Gy_5Fx.json
portpy/config_files/optimization_params/optimization_params_Lung_2Gy_30Fx.json
portpy/config_files/optimization_params/optimization_params_Lung_2Gy_30Fx_vmat.json
portpy/config_files/optimization_params/optimization_params_Paraspinal_1Fx.json
portpy/config_files/optimization_params/optimization_params_Prostate_26Fx.json
portpy/config_files/optimization_params/optimization_params_Prostate_26Fx_vmat.json
portpy/config_files/optimization_params/optimization_params_Prostate_5Gy_5Fx_vmat.json
portpy/config_files/scorecard/SC_Lung(60Gy)_2022MAAS_ExampleV2.json
portpy/config_files/scorecard/SC_ProstateSBRT-ARTIA-V1.2(KBPModel).json
portpy/config_files/tcia_patients/tcia_patients_metadata.json
portpy/photon/__init__.py
portpy/photon/beam.py
portpy/photon/clinical_criteria.py
portpy/photon/ct.py
portpy/photon/data_explorer.py
portpy/photon/evaluation.py
portpy/photon/influence_matrix.py
portpy/photon/optimization.py
portpy/photon/plan.py
portpy/photon/structures.py
portpy/photon/visualization.py
portpy/photon/utils/__init__.py
portpy/photon/utils/convert_dose_rt_dicom_to_portpy.py
portpy/photon/utils/create_ct_dose_voxel_map.py
portpy/photon/utils/download_portpy_data.py
portpy/photon/utils/get_apt_reg_metric.py
portpy/photon/utils/get_eclipse_fluence.py
portpy/photon/utils/get_sparse_only.py
portpy/photon/utils/leaf_sequencing_siochi.py
portpy/photon/utils/save_nrrd.py
portpy/photon/utils/save_or_load_pickle.py
portpy/photon/utils/scorecard.py
portpy/photon/utils/slicer_script.py
portpy/photon/utils/view_in_slicer_jupyter.py
portpy/photon/utils/write_rt_plan_imrt.py
portpy/photon/utils/write_rt_plan_vmat.py
portpy/photon/vmat_scp/__init__.py
portpy/photon/vmat_scp/arcs.py
portpy/photon/vmat_scp/utilities.py
portpy/photon/vmat_scp/vmat_optimization_col_gen.py
portpy/photon/vmat_scp/vmat_scp_optimization.py
tests/test_ai_module.py
tests/test_basic_tutorial.py