ete3>=3.1.3
joblib>=1.4.2
matplotlib>=3.10.1
numpy>=2.2.3
numba>=0.62.0
pandas>=2.2.3
scikit-learn>=1.6.1
seaborn<0.14,>=0.13.0
setuptools>=75.8.0
statsmodels>=0.14.4
wheel>=0.45.1
annotated-types>=0.7.0
biopython>=1.85
certifi>=2025.1.31
charset-normalizer>=3.4.1
idna>=3.10
itolapi>=4.1.5
jinja2>=3.1.6
markupsafe>=3.0.2
pastml>=1.9.50
pydantic>=2.10.6
pydantic-core>=2.27.2
requests>=2.32.3
scipy>=1.14.0
urllib3>=2.4.0
snakemake>=9.10
