Completed 27 Bytes/27 Bytes (140 Bytes/s) with 1 file(s) remaining
upload: ../../../../../../var/folders/rk/2n95m40s1zs48qr48ynwhxwm0000gn/T/tmp26fwr6jo to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/_write_test.txt
delete: s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/_write_test.txt
Completed 5.6 MiB/77.6 MiB (11.9 MiB/s) with 1 file(s) remaining
Completed 13.6 MiB/77.6 MiB (24.1 MiB/s) with 1 file(s) remaining
Completed 21.6 MiB/77.6 MiB (37.1 MiB/s) with 1 file(s) remaining
Completed 29.6 MiB/77.6 MiB (50.3 MiB/s) with 1 file(s) remaining
Completed 37.6 MiB/77.6 MiB (61.8 MiB/s) with 1 file(s) remaining
Completed 45.6 MiB/77.6 MiB (73.9 MiB/s) with 1 file(s) remaining
Completed 53.6 MiB/77.6 MiB (83.8 MiB/s) with 1 file(s) remaining
Completed 61.6 MiB/77.6 MiB (93.0 MiB/s) with 1 file(s) remaining
Completed 69.6 MiB/77.6 MiB (104.9 MiB/s) with 1 file(s) remaining
Completed 77.6 MiB/77.6 MiB (99.8 MiB/s) with 1 file(s) remaining
copy: s3://lsmc-dayoa-control-data-usw2/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG002_0.1x_R1.fastq.gz to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/JEMILMN0P1_HG002-NOVASEQ-PF-gdna-0p1x_D0_0/HG002_0.1x_R1.fastq.gz
Completed 8.0 MiB/79.5 MiB (16.7 MiB/s) with 1 file(s) remaining
Completed 15.5 MiB/79.5 MiB (31.2 MiB/s) with 1 file(s) remaining
Completed 23.5 MiB/79.5 MiB (42.4 MiB/s) with 1 file(s) remaining
Completed 31.5 MiB/79.5 MiB (56.8 MiB/s) with 1 file(s) remaining
Completed 39.5 MiB/79.5 MiB (68.8 MiB/s) with 1 file(s) remaining
Completed 47.5 MiB/79.5 MiB (82.2 MiB/s) with 1 file(s) remaining
Completed 55.5 MiB/79.5 MiB (94.2 MiB/s) with 1 file(s) remaining
Completed 63.5 MiB/79.5 MiB (106.4 MiB/s) with 1 file(s) remaining
Completed 71.5 MiB/79.5 MiB (116.5 MiB/s) with 1 file(s) remaining
Completed 79.5 MiB/79.5 MiB (110.4 MiB/s) with 1 file(s) remaining
copy: s3://lsmc-dayoa-control-data-usw2/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG002_0.1x_R2.fastq.gz to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/JEMILMN0P1_HG002-NOVASEQ-PF-gdna-0p1x_D0_0/HG002_0.1x_R2.fastq.gz
Completed 442 Bytes/442 Bytes (2.3 KiB/s) with 1 file(s) remaining
upload: docs/plans/20260526T223700Z_goodole3_inputs/20260530T122708Z_1df3375e_samples.tsv to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/20260530T122708Z_1df3375e_samples.tsv
Completed 976 Bytes/976 Bytes (5.5 KiB/s) with 1 file(s) remaining
upload: docs/plans/20260526T223700Z_goodole3_inputs/20260530T122708Z_1df3375e_units.tsv to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/20260530T122708Z_1df3375e_units.tsv
Precheck passed: rows checked=1, samples checked=1, source objects checked=32, concordance directories checked=1.
Remote staging completed successfully.
Remote FSx stage directory: /fsx/staging/staged_external_sequencing_data/remote_stage_20260530T122708Z_1df3375e
Staging DRA: dra-0157a1458f90e75d3
Staging DRA lifecycle: AVAILABLE
Staged files (2):
  /fsx/staging/staged_external_sequencing_data/remote_stage_20260530T122708Z_1df3375e/JEMILMN0P1_HG002-NOVASEQ-PF-gdna-0p1x_D0_0/HG002_0.1x_R1.fastq.gz
  /fsx/staging/staged_external_sequencing_data/remote_stage_20260530T122708Z_1df3375e/JEMILMN0P1_HG002-NOVASEQ-PF-gdna-0p1x_D0_0/HG002_0.1x_R2.fastq.gz
Generated configuration files:
  samples.tsv -> s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/20260530T122708Z_1df3375e_samples.tsv
  units.tsv   -> s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260530T122708Z_1df3375e/20260530T122708Z_1df3375e_units.tsv
