DAY-EC activated.
DAY-EC activated.
=== now ===
2026-05-30T23:16:49Z
=== fsx ===
Filesystem              Type    Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v lustre  8.8T  8.0T  807G  91% /fsx
tmpfs                   tmpfs   199G     0  199G   0% /dev/shm
/dev/root               ext4    408G   42G  367G  11% /
=== slurm ===
4653|i192mem|RUNNING|1:20:02|1|i192mem-dy-all-1|run_bclconvert_lane-run_bclconvert_L008
4657|i192mem|RUNNING|1:20:02|1|i192mem-dy-all-5|run_bclconvert_lane-run_bclconvert_L003
4658|i192mem|RUNNING|1:19:32|1|i192mem-dy-all-6|run_bclconvert_lane-run_bclconvert_L004
4660|i192mem|RUNNING|1:19:32|1|i192mem-dy-all-8|run_bclconvert_lane-run_bclconvert_L005
=== bclconvert output sizes ===
4.3T	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert
560G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001
560G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002
516G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003
553G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004
526G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005
558G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006
562G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007
546G	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L008
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002
49K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003
49K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004
49K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006
50K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007
49K	/fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L008
=== lane done files ===
2026-05-30T23:07:15.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/bclconvert.done
2026-05-30T23:09:46.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/bclconvert.done
2026-05-30T23:11:57.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/bclconvert.done
2026-05-30T23:13:57.0000000000Z /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/bclconvert.done
=== recent lane log tails ===
--- run_bclconvert.L001.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv --bcl-only-lane 1 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L001 finished: 2026-05-30T23:07:05+00:00
--- run_bclconvert.L002.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/SampleSheet.csv --bcl-only-lane 2 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L002 finished: 2026-05-30T23:13:48+00:00
--- run_bclconvert.L003.log ---
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 10000
192
Filesystem               Size  Used Avail Use% Mounted on
tmpfs                    605G     0  605G   0% /dev/shm
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 8
bcl_num_compression_threads: 48
bcl_num_decompression_threads: 16
bcl_cpu_heavy_threads: 192
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003/SampleSheet.csv --bcl-only-lane 3 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
INFO:    Using cached SIF image
--- run_bclconvert.L004.log ---
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 10000
192
Filesystem               Size  Used Avail Use% Mounted on
tmpfs                    605G     0  605G   0% /dev/shm
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 8
bcl_num_compression_threads: 48
bcl_num_decompression_threads: 16
bcl_cpu_heavy_threads: 192
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/SampleSheet.csv --bcl-only-lane 4 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
INFO:    Using cached SIF image
--- run_bclconvert.L005.log ---
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 10000
192
Filesystem               Size  Used Avail Use% Mounted on
tmpfs                    605G     0  605G   0% /dev/shm
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 8
bcl_num_compression_threads: 48
bcl_num_decompression_threads: 16
bcl_cpu_heavy_threads: 192
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005/SampleSheet.csv --bcl-only-lane 5 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
INFO:    Using cached SIF image
--- run_bclconvert.L006.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/SampleSheet.csv --bcl-only-lane 6 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L006 finished: 2026-05-30T23:11:53+00:00
--- run_bclconvert.L007.log ---
INFO:    Using cached SIF image
Index Read 2 is marked as Reverse Complement in RunInfo.xml: The barcode and UMI outputs will be output in Reverse Complement of Sample Sheet inputs.
Sample sheet being processed by common lib? Yes
SampleSheet Settings:
  FastqCompressionFormat = gzip
  OverrideCycles = Y151;I10;I10;Y151
  SoftwareVersion = 4.0.3

shared-thread-linux-native-asio output is disabled
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2022 Illumina, Inc.
Command Line: --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/SampleSheet.csv --bcl-only-lane 7 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
Conversion Begins.
# CPU hw threads available: 64
Parallel Tiles: 16. Threads Per Tile: 8
SW compressors: 48
SW decompressors: 16
SW FASTQ compression level: 1
Conversion Complete.
run_bclconvert_lane L007 finished: 2026-05-30T23:09:43+00:00
--- run_bclconvert.L008.log ---
sample_sheet_settings_by_lane_json: {}
output_legacy_stats: true
num_unknown_barcodes_reported: 10000
192
Filesystem               Size  Used Avail Use% Mounted on
tmpfs                    605G     0  605G   0% /dev/shm
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  3.7T  5.1T  42% /fsx
/usr/bin/singularity
singularity_bind_args: --bind /fsx:/fsx
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
bcl_num_parallel_tiles: 16
bcl_num_conversion_threads: 8
bcl_num_compression_threads: 48
bcl_num_decompression_threads: 16
bcl_cpu_heavy_threads: 192
bcl-convert command: singularity exec --bind /fsx:/fsx docker://nfcore/bclconvert:4.0.3 bcl-convert --bcl-input-directory /fsx/analysis_results/ubuntu/ccv20260530r57_illumina_run_qc_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 --output-directory results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L008 --sample-sheet results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L008/SampleSheet.csv --bcl-only-lane 8 --strict-mode false --first-tile-only false --bcl-sampleproject-subdirectories false --fastq-gzip-compression-level 1 --bcl-num-parallel-tiles 16 --bcl-num-conversion-threads 8 --bcl-num-compression-threads 48 --bcl-num-decompression-threads 16 --shared-thread-odirect-output false --output-legacy-stats true --num-unknown-barcodes-reported 10000 -f
INFO:    Using cached SIF image
