DAY-EC activated.
DAY-EC activated.
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0012_tiles0276-0300.log
    jobid: 15
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0012_tiles0276-0300.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0012_tiles0276-0300/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0012_tiles0276-0300/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0012_tiles0276-0300/Reports/Demultiplex_Stats.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0012_tiles0276-0300
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0012_tiles0276-0300 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0012_tiles0276-0300/SampleSheet.csv false false false 1 8 2 24 8 true true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' -f 48 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0012_tiles0276-0300.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0012_tiles0276-0300/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0012_tiles0276-0300/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0012_tiles0276-0300/bclconvert.done s_3_1380+s_3_1381+s_3_1382+s_3_1383+s_3_1384+s_3_1385+s_3_1386+s_3_1387+s_3_1388+s_3_1389+s_3_1390+s_3_1391+s_3_1392+s_3_1393+s_3_1394+s_3_1395+s_3_1396+s_3_1397+s_3_1398+s_3_1401+s_3_1402+s_3_1403+s_3_1404+s_3_1405+s_3_1406
Submitted job 15 with external jobid '60'.

[Tue Jun  2 06:44:54 2026]
rule run_bclconvert_tile_shard:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0032_tiles0761-0784/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0032_tiles0761-0784/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0032_tiles0761-0784/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0032_tiles0761-0784/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0032_tiles0761-0784.log
    jobid: 35
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0032_tiles0761-0784.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0032_tiles0761-0784/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0032_tiles0761-0784/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0032_tiles0761-0784/Reports/Demultiplex_Stats.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0032_tiles0761-0784
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0032_tiles0761-0784 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0032_tiles0761-0784/SampleSheet.csv false false false 1 8 2 24 8 true true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' -f 48 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0032_tiles0761-0784.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0032_tiles0761-0784/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0032_tiles0761-0784/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0032_tiles0761-0784/bclconvert.done s_3_2475+s_3_2476+s_3_2477+s_3_2478+s_3_2479+s_3_2480+s_3_2481+s_3_2482+s_3_2483+s_3_2484+s_3_2485+s_3_2486+s_3_2487+s_3_2488+s_3_2489+s_3_2490+s_3_2491+s_3_2492+s_3_2493+s_3_2494+s_3_2495+s_3_2496+s_3_2497+s_3_2498
Submitted job 35 with external jobid '61'.

[Tue Jun  2 06:44:54 2026]
rule run_bclconvert_tile_shard:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0026_tiles0617-0640/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0026_tiles0617-0640/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0026_tiles0617-0640/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0026_tiles0617-0640/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0026_tiles0617-0640.log
    jobid: 29
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0026_tiles0617-0640.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0026_tiles0617-0640/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0026_tiles0617-0640/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0026_tiles0617-0640/bclconvert.done; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0026_tiles0617-0640
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0026_tiles0617-0640 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0026_tiles0617-0640/SampleSheet.csv false false false 1 8 2 24 8 true true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' -f 48 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0026_tiles0617-0640.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0026_tiles0617-0640/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0026_tiles0617-0640/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0026_tiles0617-0640/bclconvert.done s_3_2329+s_3_2330+s_3_2331+s_3_2332+s_3_2333+s_3_2334+s_3_2335+s_3_2336+s_3_2337+s_3_2338+s_3_2339+s_3_2340+s_3_2341+s_3_2342+s_3_2343+s_3_2344+s_3_2345+s_3_2346+s_3_2347+s_3_2348+s_3_2349+s_3_2350+s_3_2351+s_3_2352
Submitted job 29 with external jobid '62'.

[Tue Jun  2 06:44:54 2026]
rule run_bclconvert_tile_shard:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0019_tiles0449-0472/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0019_tiles0449-0472/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0019_tiles0449-0472/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0019_tiles0449-0472/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0019_tiles0449-0472.log
    jobid: 22
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0019_tiles0449-0472.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0019_tiles0449-0472/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0019_tiles0449-0472/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0019_tiles0449-0472/Reports/Demultiplex_Stats.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0019_tiles0449-0472
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0019_tiles0449-0472 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0019_tiles0449-0472/SampleSheet.csv false false false 1 8 2 24 8 true true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' -f 48 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0019_tiles0449-0472.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0019_tiles0449-0472/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0019_tiles0449-0472/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0019_tiles0449-0472/bclconvert.done s_3_2157+s_3_2158+s_3_2159+s_3_2160+s_3_2161+s_3_2162+s_3_2163+s_3_2164+s_3_2165+s_3_2166+s_3_2167+s_3_2168+s_3_2169+s_3_2170+s_3_2171+s_3_2172+s_3_2173+s_3_2174+s_3_2175+s_3_2176+s_3_2177+s_3_2178+s_3_2179+s_3_2180
Submitted job 22 with external jobid '63'.

[Tue Jun  2 06:44:54 2026]
rule run_bclconvert_tile_shard:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0010_tiles0226-0250/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0010_tiles0226-0250/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0010_tiles0226-0250/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0010_tiles0226-0250/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0010_tiles0226-0250.log
    jobid: 13
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0010_tiles0226-0250.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0010_tiles0226-0250/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0010_tiles0226-0250/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0010_tiles0226-0250/Reports/Demultiplex_Stats.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0010_tiles0226-0250
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0010_tiles0226-0250 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0010_tiles0226-0250/SampleSheet.csv false false false 1 8 2 24 8 true true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' -f 48 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0010_tiles0226-0250.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0010_tiles0226-0250/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0010_tiles0226-0250/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0010_tiles0226-0250/bclconvert.done s_3_1330+s_3_1331+s_3_1332+s_3_1333+s_3_1334+s_3_1335+s_3_1336+s_3_1337+s_3_1338+s_3_1339+s_3_1340+s_3_1341+s_3_1342+s_3_1343+s_3_1344+s_3_1345+s_3_1346+s_3_1347+s_3_1348+s_3_1349+s_3_1350+s_3_1351+s_3_1352+s_3_1353+s_3_1354
Submitted job 13 with external jobid '64'.

[Tue Jun  2 06:44:54 2026]
rule run_bclconvert_tile_shard:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0003_tiles0051-0075/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0003_tiles0051-0075/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0003_tiles0051-0075/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0003_tiles0051-0075/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0003_tiles0051-0075.log
    jobid: 6
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0003_tiles0051-0075.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0003_tiles0051-0075/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0003_tiles0051-0075/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0003_tiles0051-0075/Reports/Demultiplex_Stats.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0003_tiles0051-0075
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0003_tiles0051-0075 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0003_tiles0051-0075/SampleSheet.csv false false false 1 8 2 24 8 true true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' -f 48 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0003_tiles0051-0075.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0003_tiles0051-0075/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0003_tiles0051-0075/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0003_tiles0051-0075/bclconvert.done s_3_1151+s_3_1152+s_3_1153+s_3_1154+s_3_1155+s_3_1156+s_3_1157+s_3_1158+s_3_1159+s_3_1160+s_3_1161+s_3_1162+s_3_1163+s_3_1164+s_3_1165+s_3_1166+s_3_1167+s_3_1168+s_3_1169+s_3_1170+s_3_1171+s_3_1172+s_3_1173+s_3_1174+s_3_1175
Submitted job 6 with external jobid '65'.

[Tue Jun  2 06:44:54 2026]
rule run_bclconvert_tile_shard:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0020_tiles0473-0496/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0020_tiles0473-0496/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0020_tiles0473-0496/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0020_tiles0473-0496/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0020_tiles0473-0496.log
    jobid: 23
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0020_tiles0473-0496.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0020_tiles0473-0496/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0020_tiles0473-0496/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0020_tiles0473-0496/Reports/fastq_list.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0020_tiles0473-0496
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0020_tiles0473-0496 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0020_tiles0473-0496/SampleSheet.csv false false false 1 8 2 24 8 true true 1000 '{"BarcodeMismatchesIndex1": "0", "BarcodeMismatchesIndex2": "0"}' '{}' -f 48 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0020_tiles0473-0496.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0020_tiles0473-0496/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0020_tiles0473-0496/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0020_tiles0473-0496/bclconvert.done s_3_2181+s_3_2182+s_3_2183+s_3_2184+s_3_2185+s_3_2186+s_3_2187+s_3_2188+s_3_2189+s_3_2190+s_3_2191+s_3_2192+s_3_2193+s_3_2194+s_3_2195+s_3_2196+s_3_2197+s_3_2198+s_3_2201+s_3_2202+s_3_2203+s_3_2204+s_3_2205+s_3_2206
Submitted job 23 with external jobid '66'.

[Tue Jun  2 06:44:54 2026]
rule run_bclconvert_tile_shard:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0011_tiles0251-0275/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0011_tiles0251-0275/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0011_tiles0251-0275/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0011_tiles0251-0275/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.0011_tiles0251-0275.log
    jobid: 14
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L003.0011_tiles0251-0275.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_reports/L003/0011_tiles0251-0275/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0011_tiles0251-0275/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0011_tiles0251-0275/Reports/Demultiplex_Stats.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L003, shard=0011_tiles0251-0275
    threads: 48
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=48, time=5440, partition=i192mem, vcpu=48, distribution=block, exclusive=, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/bcl25b_l003_shard032_20260602T000733Z/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/tile_fastqs/L003/0011_tiles0251-0275 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/ru--output truncated--
