# Public Python names that no page outside the specification names in code
# (.github/scripts/api_index.py). This list may only shrink: document a name
# in the reference page that covers it and delete its line here. A new public
# name is documented, never added.
medh5.Agent
medh5.Instance
medh5.MEDH5IntegrityError
medh5.MEDH5SchemaError
medh5.QualityRecord
medh5.SplitAudit
medh5.TimepointPair
medh5.VoxelAnnotation
medh5.__format_version__
medh5.annotations.ANNOTATION_KINDS
medh5.annotations.AnnotationHeader
medh5.annotations.AnnotationPayload
medh5.annotations.BoxesAnnotation
medh5.annotations.ClassificationAnnotation
medh5.annotations.ContoursAnnotation
medh5.annotations.GEOMETRIC_KINDS
medh5.annotations.GeometricAnnotation
medh5.annotations.Instance
medh5.annotations.KeypointsAnnotation
medh5.annotations.MeshAnnotation
medh5.annotations.ObbAnnotation
medh5.annotations.PointsAnnotation
medh5.annotations.READERS
medh5.annotations.RESERVED_KINDS
medh5.annotations.SCOPES
medh5.annotations.SPACES
medh5.annotations.TASKS
medh5.annotations.VOXEL_KINDS
medh5.annotations.VoxelAnnotation
medh5.annotations.base.ANNOTATION_KINDS
medh5.annotations.base.AnnotationHeader
medh5.annotations.base.AnnotationPayload
medh5.annotations.base.DEFAULT_TASK_FOR_KIND
medh5.annotations.base.GEOMETRIC_KINDS
medh5.annotations.base.Instance
medh5.annotations.base.RESERVED_KINDS
medh5.annotations.base.SPEC_ANNOTATION_ATTRS
medh5.annotations.base.TASKS
medh5.annotations.base.VOXEL_KINDS
medh5.annotations.base.VoxelAnnotation
medh5.annotations.base.instance_id_dtype
medh5.annotations.classification.ClassificationAnnotation
medh5.annotations.classification.Labels
medh5.annotations.classification.SCOPES
medh5.annotations.classification.assertion_rows
medh5.annotations.classification.check_scope
medh5.annotations.classification.encode_classification
medh5.annotations.encode_boxes
medh5.annotations.encode_classification
medh5.annotations.encode_contours
medh5.annotations.encode_keypoints
medh5.annotations.encode_mesh
medh5.annotations.encode_obb
medh5.annotations.encode_points
medh5.annotations.encode_voxels
medh5.annotations.geometric.BoxesAnnotation
medh5.annotations.geometric.CONTOUR_ROLES
medh5.annotations.geometric.ContoursAnnotation
medh5.annotations.geometric.GEOMETRIC_READERS
medh5.annotations.geometric.GeometricAnnotation
medh5.annotations.geometric.KeypointsAnnotation
medh5.annotations.geometric.MeshAnnotation
medh5.annotations.geometric.ObbAnnotation
medh5.annotations.geometric.PointsAnnotation
medh5.annotations.geometric.ROTATION_TOL
medh5.annotations.geometric.SPACES
medh5.annotations.geometric.VISIBILITY
medh5.annotations.geometric.check_slice_index
medh5.annotations.geometric.check_space
medh5.annotations.geometric.encode_boxes
medh5.annotations.geometric.encode_contours
medh5.annotations.geometric.encode_keypoints
medh5.annotations.geometric.encode_mesh
medh5.annotations.geometric.encode_obb
medh5.annotations.geometric.encode_points
medh5.annotations.open_annotation
medh5.annotations.select_encoding
medh5.annotations.voxel.AnnotationPayload
medh5.annotations.voxel.BITS_PER_PLANE
medh5.annotations.voxel.BitmaskAnnotation
medh5.annotations.voxel.CostModel
medh5.annotations.voxel.DEFAULT_THRESHOLD
medh5.annotations.voxel.IN_BAND_IGNORE_KINDS
medh5.annotations.voxel.Instance
medh5.annotations.voxel.InstancesAnnotation
medh5.annotations.voxel.LOCALIZED_BBOX_FRACTION
medh5.annotations.voxel.LabelmapAnnotation
medh5.annotations.voxel.LayersAnnotation
medh5.annotations.voxel.MaskAnnotation
medh5.annotations.voxel.Masks
medh5.annotations.voxel.ProbmapAnnotation
medh5.annotations.voxel.READERS
medh5.annotations.voxel.SLAB_BYTES
medh5.annotations.voxel.SPARSE_FILL
medh5.annotations.voxel.STORAGE_DTYPES
medh5.annotations.voxel.analyse
medh5.annotations.voxel.annotation_to_masks
medh5.annotations.voxel.checked_class_id
medh5.annotations.voxel.contains_at
medh5.annotations.voxel.cost_model
medh5.annotations.voxel.encode_bitmask
medh5.annotations.voxel.encode_instances
medh5.annotations.voxel.encode_labelmap
medh5.annotations.voxel.encode_layers
medh5.annotations.voxel.encode_masks
medh5.annotations.voxel.encode_probmap
medh5.annotations.voxel.encode_voxels
medh5.annotations.voxel.greedy_colour
medh5.annotations.voxel.instances_from_masks
medh5.annotations.voxel.label_dtype_size
medh5.annotations.voxel.layers_from_colouring
medh5.annotations.voxel.masks_equal
medh5.annotations.voxel.normalize_masks
medh5.annotations.voxel.payload_to_masks
medh5.annotations.voxel.select_encoding
medh5.annotations.voxel.storage_dtype
medh5.bench.MANY_CLASSES
medh5.bench.Measurement
medh5.bench.TARGETS
medh5.bench.benchmark_file
medh5.bench.many_class_measurement
medh5.bench.synthetic_many_class_sample
medh5.bench.synthetic_pair
medh5.bench.throughput
medh5.bench.timed
medh5.cache.CacheEntry
medh5.cache.LEVELS
medh5.cache.SCHEMA
medh5.cache.SUFFIX
medh5.cache.event_entry_id
medh5.cache.open_cache
medh5.cli.EXIT_ERROR
medh5.cli.EXIT_OK
medh5.cli.EXIT_USAGE
medh5.cli.command_tree
medh5.cli.main
medh5.clinical.ASSESSMENT_SYSTEM
medh5.clinical.Bounds
medh5.clinical.CLOCK_REFERENCES
medh5.clinical.ENDPOINT_TYPES
medh5.clinical.EVENT_KINDS
medh5.clinical.LESION_PRESENCE
medh5.clinical.LESION_VALUES
medh5.clinical.MICROSECOND
medh5.clinical.PROFILE
medh5.clinical.RELATIONS
medh5.clinical.SCHEMA
medh5.clinical.SECOND
medh5.clinical.SELECTION_POLICIES
medh5.clinical.STATUSES
medh5.clinical.SelectedEvent
medh5.clinical.TEMPORAL_TYPES
medh5.clinical.hours
medh5.clinical.records_from
medh5.collection.SAMPLES_GROUP
medh5.collection.SUFFIX
medh5.collection.default_key
medh5.collection.is_collection
medh5.conformance.CASES
medh5.conformance.CHECKSUMS
medh5.conformance.CaseResult
medh5.conformance.SCHEMA
medh5.conformance.SEED
medh5.conformance.build_corpus
medh5.conformance.case_by_name
medh5.conformance.run_corpus
medh5.curation.ACTIVITY_FIELDS
medh5.curation.ACTIVITY_TYPES
medh5.curation.AGENT_FIELDS
medh5.curation.AGENT_TYPES
medh5.curation.Agent
medh5.curation.DATE_PATTERN
medh5.curation.ID_SOURCE
medh5.curation.ISSUE_SEVERITY
medh5.curation.InstanceAgreement
medh5.curation.LATERALITY_VALUES
medh5.curation.PARTITIONS
medh5.curation.PRESENT
medh5.curation.PSEUDONYM_SOURCE
medh5.curation.QUALITY_FIELDS
medh5.curation.QUALITY_STATUS
medh5.curation.QualityRecord
medh5.curation.RESOLVED
medh5.curation.RFC3339
medh5.curation.SEX_VALUES
medh5.curation.SplitAudit
medh5.curation.TIMEPOINT_FIELDS
medh5.curation.UNEXAMINED
medh5.curation.VoxelAgreement
medh5.curation.agreement.DEFAULT_IOU
medh5.curation.agreement.InstanceAgreement
medh5.curation.agreement.OBJECT_KINDS
medh5.curation.agreement.VoxelAgreement
medh5.curation.agreement.box_iou
medh5.curation.build_tracks
medh5.curation.carries_instance_ids
medh5.curation.check_timestamp
medh5.curation.dice_agreement
medh5.curation.quality_from_json
medh5.curation.quality_to_json
medh5.curation.scrub.DATE_KEYS
medh5.curation.scrub.IDENTIFYING_KEYS
medh5.curation.scrub.IDENTITY_RULES
medh5.curation.scrub.MAX_DEPTH
medh5.curation.scrub.PSEUDONYM_PREFIX
medh5.curation.scrub.QUASI_IDENTIFYING_KEYS
medh5.curation.scrub.STRICT_RULES
medh5.curation.scrub.ScrubReport
medh5.curation.scrub.UID_KEYS
medh5.curation.scrub.UNFIXABLE_LOCATIONS
medh5.curation.scrub.scan_document
medh5.curation.splits.Conflict
medh5.curation.splits.Leak
medh5.curation.splits.Membership
medh5.curation.splits.SplitAudit
medh5.curation.splits.anatomy_units
medh5.curation.splits_from_json
medh5.dataset.Assignment
medh5.dataset.ClassStats
medh5.dataset.CohortReport
medh5.dataset.DatasetStats
medh5.dataset.Moments
medh5.dataset.check.CohortReport
medh5.dataset.check.SEVERITIES
medh5.dataset.entries_for
medh5.dataset.find
medh5.dataset.manifest.GROUPABLE
medh5.dataset.manifest.SUFFIXES
medh5.dataset.manifest.entries_for
medh5.dataset.manifest.find
medh5.dataset.split.Assignment
medh5.dataset.split.DEFAULT_RATIOS
medh5.dataset.stats.ClassStats
medh5.dataset.stats.DatasetStats
medh5.dataset.stats.Moments
medh5.dataset.stats.stats_for
medh5.document.META_DATASET
medh5.document.new_document
medh5.document.read_document
medh5.document.read_document_text
medh5.document.validate_against_schema
medh5.errors.Code
medh5.errors.Domain
medh5.errors.MEDH5IntegrityError
medh5.errors.MEDH5SchemaError
medh5.errors.Severity
medh5.errors.codes_for
medh5.geometry.AXIS_KINDS
medh5.geometry.DOWNSAMPLE_METHODS
medh5.geometry.GEOMETRY_RTOL
medh5.geometry.KNOWN_UNITS
medh5.geometry.LABEL_SAFE_METHODS
medh5.geometry.MAX_SPATIAL
medh5.geometry.MIN_SPATIAL
medh5.geometry.Pyramid
medh5.geometry.SPEC_GRID_ATTRS
medh5.geometry.TIME_UNITS
medh5.geometry.affine_summary
medh5.geometry.apply_affine_to_box
medh5.geometry.box_corners
medh5.geometry.build_affine
medh5.geometry.check_orthonormal
medh5.geometry.check_pyramid
medh5.geometry.decompose_affine
medh5.geometry.derive_level_grid
medh5.geometry.index_to_world
medh5.geometry.is_orthonormal
medh5.geometry.is_proper_rotation
medh5.geometry.pyramid_factors
medh5.geometry.read_grid
medh5.geometry.read_grids
medh5.geometry.slices_to_box
medh5.geometry.voxel_volume
medh5.geometry.world_to_index
medh5.image.SPEC_IMAGE_ATTRS
medh5.image.VALUE_TYPES
medh5.image.check_value_type
medh5.image.is_probability
medh5.image.lossless_as_int16
medh5.integrity.ATTESTED_GROUPS
medh5.integrity.DEFAULT_ALGO
medh5.integrity.DIGEST_ALGOS
medh5.integrity.Diagnosis
medh5.integrity.Repair
medh5.integrity.STREAM_BYTES
medh5.integrity.array_digest
medh5.integrity.attrs_digest
medh5.integrity.canonical_attrs
medh5.integrity.collect_digests
medh5.integrity.dataset_digest
medh5.integrity.diagnose
medh5.integrity.digest_bytes
medh5.integrity.fix_paths
medh5.integrity.group_digest
medh5.integrity.parse_digest
medh5.integrity.raw_chunks
medh5.integrity.relative_path
medh5.integrity.stale_index_entries
medh5.integrity.subtrees_identical
medh5.integrity.verify_object
medh5.integrity.verify_root
medh5.io.ConversionReport
medh5.io.Note
medh5.io.Series
medh5.io.SubjectGroup
medh5.io.convert_world
medh5.io.dicom.SPACING_TOLERANCE
medh5.io.dicom.STORED_TAGS
medh5.io.dicom.Series
medh5.io.dicom.require_pydicom
medh5.io.dicom_seg.SLICE_TOLERANCE
medh5.io.dicom_seg.place_frames
medh5.io.dicom_seg.require_highdicom
medh5.io.group_by_subject
medh5.io.grouping.FALLBACK_PREFIX
medh5.io.grouping.Occasion
medh5.io.grouping.SubjectGroup
medh5.io.grouping.build_occasions
medh5.io.grouping.contradictions
medh5.io.grouping.group_by_subject
medh5.io.grouping.note_instance_ids
medh5.io.grouping.output_name
medh5.io.legacy.BOX_SHIFT
medh5.io.legacy.LegacyMeta
medh5.io.legacy.LegacySample
medh5.io.legacy.LegacySpatial
medh5.io.legacy.SCHEMA_VERSION
medh5.io.legacy.SUFFIX
medh5.io.legacy.is_legacy
medh5.io.legacy.legacy_meta
medh5.io.legacy.load_sidecar
medh5.io.legacy.read_legacy
medh5.io.legacy.write_sidecar
medh5.io.merge_reports
medh5.io.nifti.RAS_TO_LPS
medh5.io.nifti.convert_world
medh5.io.nifti.require_nibabel
medh5.io.nnunetv2.BACKGROUND
medh5.io.nnunetv2.REQUIRED_KEYS
medh5.io.nnunetv2.read_dataset_json
medh5.io.report.ConversionReport
medh5.io.report.Note
medh5.io.report.SEVERITIES
medh5.io.report.merge_reports
medh5.io.rtstruct.MIN_POLYGON_VERTICES
medh5.io.rtstruct.read_rtstruct
medh5.labels.BACKGROUND_ID
medh5.labels.CLOSURES
medh5.labels.FORMS
medh5.labels.IGNORE_ID
medh5.labels.INLINE_REQUIRED_BELOW
medh5.labels.MAX_CLASS_ID
medh5.labels.OntologyCode
medh5.labels.Relation
medh5.labels.Skeleton
medh5.labels.canonical_json
medh5.labels.check_class_id
medh5.labels.from_keys
medh5.labels.unregister
medh5.monai.require_monai
medh5.nodes.Attrs
medh5.nodes.Group
medh5.sample.AnnotationCollection
medh5.sample.FRAME_ATTRS
medh5.sample.ImageCollection
medh5.sample.MANAGED_ROOT_ATTRS
medh5.sample.ROOT_DIGEST_ATTRS
medh5.sample.STANDARD_GROUPS
medh5.sample.TimepointView
medh5.sample.annotation_id
medh5.sampling.PAIR_MODES
medh5.sampling.PairReport
medh5.sampling.STRATEGIES
medh5.sampling.TimepointPair
medh5.sampling.coerce_patch_size
medh5.sampling.window_around
medh5.storage.BLOSC2_FILTER_ID
medh5.storage.BLOSC_FILTER_ID
medh5.storage.BUILTIN_FILTER_IDS
medh5.storage.BULK_MIN_BYTES
medh5.storage.CACHE_SAFETY
medh5.storage.COMPRESS_MIN_BYTES
medh5.storage.CodecProfile
medh5.storage.DEFAULT_L3_BYTES
medh5.storage.DEFAULT_MAX_COORDS
medh5.storage.DEFAULT_OCCUPANCY_FACTOR
medh5.storage.DEFAULT_PATCH
medh5.storage.DEFAULT_PROFILE
medh5.storage.IndexPayload
medh5.storage.MAX_CHUNK_BYTES
medh5.storage.MIN_CHUNK_BYTES
medh5.storage.OVERSHOOT_LIMIT
medh5.storage.Role
medh5.storage.chunk_report
medh5.storage.describe_filters
medh5.storage.detect_l3_bytes
medh5.storage.field_chunks
medh5.storage.fit_chunks
medh5.storage.grid_chunks
medh5.storage.is_bulk
medh5.storage.optimize_chunks
medh5.storage.profile_family
medh5.storage.read_indices
medh5.storage.recompress_paths
medh5.storage.spatial_chunk_for
medh5.task.CENSORING
medh5.task.EventTable
medh5.task.LinkTable
medh5.task.Packed
medh5.task.ROIS
medh5.task.ROW_STATUSES
medh5.task.Reconciled
medh5.task.Row
medh5.task.SCHEMA
medh5.task.SELECTION_STATUSES
medh5.task.SlotFill
medh5.task.Subject
medh5.task.SubjectHistory
medh5.task.TARGET_STATUSES
medh5.task.TargetLabel
medh5.torch.ALIGNMENTS
medh5.torch.AVAILABLE
medh5.torch.LABEL_FORMATS
medh5.torch.PairReport
medh5.torch.TimepointPair
medh5.torch.clinical.PAD
medh5.torch.clinical.UNKNOWN
medh5.torch.clinical.concept_of
medh5.torch.collate.stack_images
medh5.torch.datasets.ALIGNMENTS
medh5.torch.datasets.LABEL_FORMATS
medh5.torch.handles.DEFAULT_MAXSIZE
medh5.torch.handles.open_cached
medh5.torch.open_cached
medh5.torch.require_torch
medh5.torch.stack_images
medh5.transforms.BSplineTransform
medh5.transforms.DEFAULT_ORDER
medh5.transforms.DisplacementTransform
medh5.transforms.EXTRAPOLATIONS
medh5.transforms.FLOAT16_SAFE_VOXELS
medh5.transforms.INTERPOLATIONS
medh5.transforms.LAST_ROW_TOL
medh5.transforms.SPEC_TRANSFORM_ATTRS
medh5.transforms.SUPPORTED_ORDERS
medh5.transforms.TRANSFORM_KINDS
medh5.transforms.TransformHeader
medh5.transforms.VECTOR_SPACES
medh5.transforms.basis
medh5.transforms.check_transform_id
medh5.transforms.cubic_sample
medh5.transforms.encode_affine
medh5.transforms.encode_bspline
medh5.transforms.encode_composite
medh5.transforms.encode_displacement
medh5.transforms.encode_identity
medh5.transforms.frame_graph
medh5.transforms.inside_extent
medh5.transforms.linear_part
medh5.transforms.linear_sample
medh5.transforms.refuse_outside
medh5.transforms.resolve_between
medh5.transforms.sample_field
medh5.transforms.to_world_vectors
medh5.transforms.wrap_transform
medh5.validate.LEVELS
medh5.validate.LEVEL_ORDER
medh5.validate.Level
medh5.validate.Report
medh5.validate.merge
medh5.validate.rules_for
medh5.validate.validate_root
