LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
docs/conf.py
docs/source/conf.py
enspara/__init__.py
enspara/exception.py
enspara.egg-info/PKG-INFO
enspara.egg-info/SOURCES.txt
enspara.egg-info/dependency_links.txt
enspara.egg-info/entry_points.txt
enspara.egg-info/requires.txt
enspara.egg-info/top_level.txt
enspara/apps/__init__.py
enspara/apps/cluster.py
enspara/apps/collect_cards.py
enspara/apps/compute-shannon-entropy.py
enspara/apps/implied_timescales.py
enspara/apps/main.py
enspara/apps/reassign.py
enspara/apps/smFRET_dye_MC.py
enspara/apps/smFRET_point_clouds.py
enspara/apps/util.py
enspara/cards/__init__.py
enspara/cards/cards.py
enspara/cards/disorder.py
enspara/cards/featurizers.py
enspara/citation/__init__.py
enspara/citation/citation.py
enspara/cluster/__init__.py
enspara/cluster/hybrid.py
enspara/cluster/kcenters.py
enspara/cluster/kmedoids.py
enspara/cluster/save_states.py
enspara/cluster/util.py
enspara/data/dyes/point-clouds/make_point_clouds.py
enspara/geometry/__init__.py
enspara/geometry/dye_lifetimes.py
enspara/geometry/dyes_from_expt_dist.py
enspara/geometry/explicit_r0_calc.py
enspara/geometry/helix.py
enspara/geometry/libdist.c
enspara/geometry/libdist.pyx
enspara/geometry/pockets.py
enspara/geometry/rmsf.py
enspara/geometry/rotamer.py
enspara/info_theory/__init__.py
enspara/info_theory/entropy.py
enspara/info_theory/exposons.py
enspara/info_theory/libinfo.c
enspara/info_theory/libinfo.pyx
enspara/info_theory/mutual_info.py
enspara/mpi/__init__.py
enspara/mpi/io.py
enspara/mpi/ops.py
enspara/mpi/util.py
enspara/msm/__init__.py
enspara/msm/bace.py
enspara/msm/bootstrap.py
enspara/msm/builders.py
enspara/msm/libmsm.c
enspara/msm/libmsm.pyx
enspara/msm/msm.py
enspara/msm/synthetic_data.py
enspara/msm/timescales.py
enspara/msm/transition_matrices.py
enspara/ra/__init__.py
enspara/ra/ra.py
enspara/test/__init__.py
enspara/test/msm_data.py
enspara/test/test_apps_cluster.py
enspara/test/test_apps_cluster_mpi.py
enspara/test/test_apps_implied_timescales.py
enspara/test/test_apps_reassign.py
enspara/test/test_bace.py
enspara/test/test_cards.py
enspara/test/test_cluster.py
enspara/test/test_cluster_util.py
enspara/test/test_disorder.py
enspara/test/test_entropy.py
enspara/test/test_exposons.py
enspara/test/test_libdist.py
enspara/test/test_mpi_io.py
enspara/test/test_mpi_ops.py
enspara/test/test_msm_bootstrap.py
enspara/test/test_msm_funcs.py
enspara/test/test_msm_libmsm.py
enspara/test/test_msm_obj.py
enspara/test/test_mutual_info.py
enspara/test/test_ra.py
enspara/test/test_rotamer.py
enspara/test/test_smfret.py
enspara/test/test_tpt_fluxes.py
enspara/test/util.py
enspara/tpt/__init__.py
enspara/tpt/core.py
enspara/tpt/path.py
enspara/tpt/tpt.py
enspara/util/__init__.py
enspara/util/array.py
enspara/util/load.py
enspara/util/log.py
enspara/util/parallel.py