.gitignore
.readthedocs.yaml
CHANGELOG.md
CITATION.cff
LICENSE
MANIFEST.in
README.md
SECURITY.md
pyproject.toml
.github/workflows/publish.yml
.github/workflows/tests.yml
docs/changelog.md
docs/conf.py
docs/faq.md
docs/index.md
docs/installation.md
docs/license.md
docs/quickstart.md
docs/requirements.txt
docs/_static/css/custom.css
docs/api/index.md
docs/tutorials/index.md
docs/tutorials/pbmc10k_hvg_compare.ipynb
docs/user_guide/index.md
docs/user_guide/method.md
docs/user_guide/outputs.md
docs/user_guide/parameters.md
examples/README.md
src/scfair/__init__.py
src/scfair/_utils.py
src/scfair/_version.py
src/scfair/py.typed
src/scfair/pp/__init__.py
src/scfair/pp/_auto_n.py
src/scfair/pp/_diagnosis.py
src/scfair/pp/_granularity.py
src/scfair/pp/_highly_variable_genes.py
src/scfair/pp/_options.py
src/scfair/pp/_raw_counts.py
tests/conftest.py
tests/test_auto_n.py
tests/test_diagnosis.py
tests/test_granularity.py
tests/test_highly_variable_genes.py
tests/test_rare_marker_recovery.py
tests/test_raw_counts.py