chebi-utils>=0.2.1
clingo>=5.8.0
networkx>=3.6.1
numpy>=2.4.3
pandas>=3.0.1
rdkit>=2025.9.6
tqdm>=4.67.3

[dense]
sentence-transformers>=5.6.0

[explain]
xclingo>=2.0b14
Pillow>=12.1.1

[llm]
anthropic>=0.104.1
claude-agent-sdk>=0.2.87
openai>=2.0
pydantic>=2.0
python-dotenv>=1.2.2
