LICENSE
README.md
pyproject.toml
setup.py
TranslonScorer/__init__.py
TranslonScorer/assemble.py
TranslonScorer/cli.py
TranslonScorer/config.py
TranslonScorer/consequential.py
TranslonScorer/events.py
TranslonScorer/frame_support.py
TranslonScorer/legacy_workflow.py
TranslonScorer/model.py
TranslonScorer/offsets.py
TranslonScorer/qc.py
TranslonScorer/report.py
TranslonScorer/workflows.py
TranslonScorer/alignments/__init__.py
TranslonScorer/alignments/builder.py
TranslonScorer/alignments/provenance.py
TranslonScorer/alignments/schema.py
TranslonScorer/core/__init__.py
TranslonScorer/core/coordinates.py
TranslonScorer/core/orffinder.py
TranslonScorer/counts/__init__.py
TranslonScorer/counts/builder.py
TranslonScorer/counts/schema.py
TranslonScorer/coverage/__init__.py
TranslonScorer/coverage/bam.py
TranslonScorer/coverage/base.py
TranslonScorer/coverage/bigwig.py
TranslonScorer/coverage/cohort_profiles.py
TranslonScorer/coverage/index_from_bam.py
TranslonScorer/coverage/junctions.py
TranslonScorer/coverage/locus_features.py
TranslonScorer/coverage/locus_profiles.py
TranslonScorer/coverage/mapped_index.py
TranslonScorer/coverage/psite_profile.py
TranslonScorer/coverage/transcript_coords.py
TranslonScorer/coverage/transcriptome.py
TranslonScorer/file_handlers/__init__.py
TranslonScorer/file_handlers/bam.py
TranslonScorer/file_handlers/bed.py
TranslonScorer/file_handlers/bigwig.py
TranslonScorer/file_handlers/sparse_parquet.py
TranslonScorer/file_handlers/zarr.py
TranslonScorer/frame/__init__.py
TranslonScorer/frame/bleed.py
TranslonScorer/frame/deblur.py
TranslonScorer/frame/hmm.py
TranslonScorer/frame/latent.py
TranslonScorer/frame/rdg_flux_export.py
TranslonScorer/frame/read_assignment.py
TranslonScorer/frame/validation.py
TranslonScorer/io/__init__.py
TranslonScorer/io/annotation.py
TranslonScorer/io/annotation_bundle.py
TranslonScorer/io/bam.py
TranslonScorer/io/feature_sources.py
TranslonScorer/io/inspect.py
TranslonScorer/io/matrix.py
TranslonScorer/io/store.py
TranslonScorer/matrix/__init__.py
TranslonScorer/matrix/clustering.py
TranslonScorer/matrix/normalisation.py
TranslonScorer/matrix/provider.py
TranslonScorer/matrix/psite_index.py
TranslonScorer/matrix/qc.py
TranslonScorer/matrix/rollup.py
TranslonScorer/orf/__init__.py
TranslonScorer/orf/map_orfs.py
TranslonScorer/orf/orfs_import.py
TranslonScorer/orf/panel_manifest.py
TranslonScorer/orf/score_schema.py
TranslonScorer/scoring/__init__.py
TranslonScorer/scoring/aspects.py
TranslonScorer/scoring/attribution.py
TranslonScorer/scoring/evidence.py
TranslonScorer/scoring/run.py
TranslonScorer/scoring/signature.py
TranslonScorer/utils/__init__.py
TranslonScorer/utils/io.py
TranslonScorer/utils/logging.py
tests/test_alignments.py
tests/test_attribution.py
tests/test_bam_provider.py
tests/test_bigwig_provider.py
tests/test_boundary_axes.py
tests/test_cif_composition.py
tests/test_cli_workflows.py
tests/test_coordinates_unit.py
tests/test_counts.py
tests/test_e2e_smoke.py
tests/test_feature_sources.py
tests/test_frame_rollup.py
tests/test_gini.py
tests/test_golden.py
tests/test_locus_profiles.py
tests/test_map_track.py
tests/test_matrix_normalisation.py
tests/test_new_tree_units.py
tests/test_orffinder_unit.py
tests/test_psite_index.py
tests/test_psite_index_query.py
tests/test_read_assignment.py
tests/test_report_consequential.py
tests/test_score_first_gates.py
tests/test_scoring.py
tests/test_signature_scores.py
tests/test_significance_lenses.py
tests/test_sparse_parquet_profiles.py
tests/test_splice_aware_flank.py
tests/test_store.py
tests/test_transcriptome_projection.py
translonscorer.egg-info/PKG-INFO
translonscorer.egg-info/SOURCES.txt
translonscorer.egg-info/dependency_links.txt
translonscorer.egg-info/entry_points.txt
translonscorer.egg-info/requires.txt
translonscorer.egg-info/top_level.txt