LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
conda/meta.yaml
src/sjcab_peak2anno_db/__init__.py
src/sjcab_peak2anno_db/_chromhmm.py
src/sjcab_peak2anno_db/_cli.py
src/sjcab_peak2anno_db/_config.py
src/sjcab_peak2anno_db/_dedup.py
src/sjcab_peak2anno_db/_derive.py
src/sjcab_peak2anno_db/_download.py
src/sjcab_peak2anno_db/_download_log.py
src/sjcab_peak2anno_db/_external.py
src/sjcab_peak2anno_db/_gencode.py
src/sjcab_peak2anno_db/_install.py
src/sjcab_peak2anno_db/_liftover.py
src/sjcab_peak2anno_db/_regions.py
src/sjcab_peak2anno_db/_registry.py
src/sjcab_peak2anno_db/_segway.py
src/sjcab_peak2anno_db/_version.py
src/sjcab_peak2anno_db/py.typed
src/sjcab_peak2anno_db/data/gencode.v31.hg38.gene.bed.withtype
src/sjcab_peak2anno_db/data/gencode.v31lift37.hg19.gene.bed.withtype
src/sjcab_peak2anno_db/data/gencode.vM17.mm9.gene.bed.withtype
src/sjcab_peak2anno_db/data/gencode.vM22.mm10.gene.bed.withtype
src/sjcab_peak2anno_db/data/gencode.vM39.mm39.gene.bed.withtype
src/sjcab_peak2anno_db/data/gtf_builds.tsv
src/sjcab_peak2anno_db/data/sacCer3.geneNames.bed
src/sjcab_peak2anno_db/data/segway_downloads.tsv
src/sjcab_peak2anno_db/data/blacklists/ce10-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/ce11-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/dm3-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/dm6-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/hg18-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/hg19-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/hg38-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/mm10-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/mm10-blacklist.mm39.bed
src/sjcab_peak2anno_db/data/blacklists/mm39-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/mm9-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/readme.md
src/sjcab_peak2anno_db/data/blacklists/sacCer3-blacklist.bed
src/sjcab_peak2anno_db/data/blacklists/stats.txt
src/sjcab_peak2anno_db/data/cgi/hg19_cgi.bed
src/sjcab_peak2anno_db/data/cgi/hg38_cgi.bed
src/sjcab_peak2anno_db/data/cgi/mm10_cgi.bed
src/sjcab_peak2anno_db/data/cgi/mm39_cgi.bed
src/sjcab_peak2anno_db/data/cgi/mm9_cgi.bed
src/sjcab_peak2anno_db/data/sizes/anopheles_gambiae.sizes
src/sjcab_peak2anno_db/data/sizes/anopheles_gambiae.sizes.clean
src/sjcab_peak2anno_db/data/sizes/arabidopsis_thaliana.sizes
src/sjcab_peak2anno_db/data/sizes/arabidopsis_thaliana.sizes.clean
src/sjcab_peak2anno_db/data/sizes/aspergillus_nidulans.sizes
src/sjcab_peak2anno_db/data/sizes/aspergillus_nidulans.sizes.clean
src/sjcab_peak2anno_db/data/sizes/caenorhabditis_elegans.sizes
src/sjcab_peak2anno_db/data/sizes/caenorhabditis_elegans.sizes.clean
src/sjcab_peak2anno_db/data/sizes/canFam6.sizes
src/sjcab_peak2anno_db/data/sizes/canFam6.sizes.clean
src/sjcab_peak2anno_db/data/sizes/candida_albicans.sizes
src/sjcab_peak2anno_db/data/sizes/candida_albicans.sizes.clean
src/sjcab_peak2anno_db/data/sizes/canis_familiaris.sizes
src/sjcab_peak2anno_db/data/sizes/canis_familiaris.sizes.clean
src/sjcab_peak2anno_db/data/sizes/ce10.sizes
src/sjcab_peak2anno_db/data/sizes/ce10.sizes.clean
src/sjcab_peak2anno_db/data/sizes/ce11.sizes
src/sjcab_peak2anno_db/data/sizes/ce11.sizes.clean
src/sjcab_peak2anno_db/data/sizes/danio_rerio.sizes
src/sjcab_peak2anno_db/data/sizes/danio_rerio.sizes.clean
src/sjcab_peak2anno_db/data/sizes/dm3.sizes
src/sjcab_peak2anno_db/data/sizes/dm3.sizes.clean
src/sjcab_peak2anno_db/data/sizes/drosophila_melanogaster.sizes
src/sjcab_peak2anno_db/data/sizes/drosophila_melanogaster.sizes.clean
src/sjcab_peak2anno_db/data/sizes/equCab2.sizes
src/sjcab_peak2anno_db/data/sizes/equCab2.sizes.clean
src/sjcab_peak2anno_db/data/sizes/felis_catus.sizes
src/sjcab_peak2anno_db/data/sizes/felis_catus.sizes.clean
src/sjcab_peak2anno_db/data/sizes/gallus_gallus.sizes
src/sjcab_peak2anno_db/data/sizes/gallus_gallus.sizes.clean
src/sjcab_peak2anno_db/data/sizes/gasAcu1.sizes
src/sjcab_peak2anno_db/data/sizes/gasAcu1.sizes.clean
src/sjcab_peak2anno_db/data/sizes/glycine_max.sizes
src/sjcab_peak2anno_db/data/sizes/glycine_max.sizes.clean
src/sjcab_peak2anno_db/data/sizes/hg19.sizes
src/sjcab_peak2anno_db/data/sizes/hg19.sizes.clean
src/sjcab_peak2anno_db/data/sizes/hg38.sizes
src/sjcab_peak2anno_db/data/sizes/hg38.sizes.clean
src/sjcab_peak2anno_db/data/sizes/homo_sapiens.sizes
src/sjcab_peak2anno_db/data/sizes/homo_sapiens.sizes.clean
src/sjcab_peak2anno_db/data/sizes/hs1.sizes
src/sjcab_peak2anno_db/data/sizes/hs1.sizes.clean
src/sjcab_peak2anno_db/data/sizes/macaca_fascicularis.sizes
src/sjcab_peak2anno_db/data/sizes/macaca_fascicularis.sizes.clean
src/sjcab_peak2anno_db/data/sizes/macaca_mulatta.sizes
src/sjcab_peak2anno_db/data/sizes/macaca_mulatta.sizes.clean
src/sjcab_peak2anno_db/data/sizes/mm10.sizes
src/sjcab_peak2anno_db/data/sizes/mm10.sizes.clean
src/sjcab_peak2anno_db/data/sizes/mm39.sizes
src/sjcab_peak2anno_db/data/sizes/mm39.sizes.clean
src/sjcab_peak2anno_db/data/sizes/mm9.sizes
src/sjcab_peak2anno_db/data/sizes/mm9.sizes.clean
src/sjcab_peak2anno_db/data/sizes/monDom5.sizes
src/sjcab_peak2anno_db/data/sizes/monDom5.sizes.clean
src/sjcab_peak2anno_db/data/sizes/mus_musculus.sizes
src/sjcab_peak2anno_db/data/sizes/mus_musculus.sizes.clean
src/sjcab_peak2anno_db/data/sizes/oryctolagus_cuniculus.sizes
src/sjcab_peak2anno_db/data/sizes/oryctolagus_cuniculus.sizes.clean
src/sjcab_peak2anno_db/data/sizes/oryza_sativa.sizes
src/sjcab_peak2anno_db/data/sizes/oryza_sativa.sizes.clean
src/sjcab_peak2anno_db/data/sizes/plasmodium_falciparum.sizes
src/sjcab_peak2anno_db/data/sizes/plasmodium_falciparum.sizes.clean
src/sjcab_peak2anno_db/data/sizes/ponAbe2.sizes
src/sjcab_peak2anno_db/data/sizes/ponAbe2.sizes.clean
src/sjcab_peak2anno_db/data/sizes/rattus_norvegicus.sizes
src/sjcab_peak2anno_db/data/sizes/rattus_norvegicus.sizes.clean
src/sjcab_peak2anno_db/data/sizes/sacCer3.sizes
src/sjcab_peak2anno_db/data/sizes/sacCer3.sizes.clean
src/sjcab_peak2anno_db/data/sizes/saccharomyces_cerevisiae.sizes
src/sjcab_peak2anno_db/data/sizes/saccharomyces_cerevisiae.sizes.clean
src/sjcab_peak2anno_db/data/sizes/schizosaccharomyces_pombe.sizes
src/sjcab_peak2anno_db/data/sizes/schizosaccharomyces_pombe.sizes.clean
src/sjcab_peak2anno_db/data/sizes/solanum_lycopersicum.sizes
src/sjcab_peak2anno_db/data/sizes/solanum_lycopersicum.sizes.clean
src/sjcab_peak2anno_db/data/sizes/sus_scrofa.sizes
src/sjcab_peak2anno_db/data/sizes/sus_scrofa.sizes.clean
src/sjcab_peak2anno_db/data/sizes/taeGut1.sizes
src/sjcab_peak2anno_db/data/sizes/taeGut1.sizes.clean
src/sjcab_peak2anno_db/data/sizes/tetNig2.sizes
src/sjcab_peak2anno_db/data/sizes/tetNig2.sizes.clean
src/sjcab_peak2anno_db/data/sizes/toxoplasma_gondii.sizes
src/sjcab_peak2anno_db/data/sizes/toxoplasma_gondii.sizes.clean
src/sjcab_peak2anno_db/data/sizes/triticum_aestivum.sizes
src/sjcab_peak2anno_db/data/sizes/triticum_aestivum.sizes.clean
src/sjcab_peak2anno_db/data/sizes/zea_mays.sizes
src/sjcab_peak2anno_db/data/sizes/zea_mays.sizes.clean
tests/test_package.py