LICENSE
MANIFEST.in
Makefile
NOTICE
README.md
VERSION
pyproject.toml
genome/META.md
genome/__init__.py
genome/ci-green-before-release.md
genome/core-change-protocol.md
genome/cost-optimization.md
genome/desktop-automation.md
genome/destructive-ops.md
genome/gitflow-review-gate.md
genome/hgt-resource-consolidation-hgt.md
genome/no-pre-existing-excuse.md
genome/providence.md
genome/subagent-delegation.md
genome/.oracles/architectural-tenets.md
genome/.oracles/atomic-workstream-protocol.md
genome/.oracles/documentation.md
genome/.oracles/feature-specs.md
genome/.oracles/git-workflow.md
genome/.oracles/optional-import-guard.md
genome/.oracles/polyglot-standards.md
genome/.oracles/tdd-protocol.md
genome/.oracles/testing.md
install/hooks.json.template
install/soma.conf.example
install/hooks/pre-commit
organs/adaptive-reviewer/SKILL.md
organs/domain-researcher/SKILL.md
organs/genesis/SKILL.md
organs/governance-auditor/SKILL.md
organs/incident-debug/SKILL.md
organs/performance-audit/SKILL.md
organs/post-mortem/SKILL.md
organs/readme-writer/SKILL.md
organs/refactoring-pilot/SKILL.md
organs/security-audit/SKILL.md
organs/session-monitor/SKILL.md
organs/session-preflight/SKILL.md
organs/spec-synthesizer/SKILL.md
organs/staff-review/SKILL.md
organs/visual-analyst/SKILL.md
soma_cli/__init__.py
soma_cli/__main__.py
soma_cli/checkpoint.py
soma_cli/cli.py
soma_cli/completion.py
soma_cli/demote.py
soma_cli/doctor.py
soma_cli/genesis.py
soma_cli/genesis_generator.py
soma_cli/genesis_scanner.py
soma_cli/harvest.py
soma_cli/hooks.py
soma_cli/init.py
soma_cli/oracle.py
soma_cli/pathcheck.py
soma_cli/promote.py
soma_cli/quarantine.py
soma_cli/report.py
soma_cli/status.py
soma_cli/sync.py
soma_cli/transfer.py
soma_cli/verify.py
soma_cli/platforms/__init__.py
soma_cli/platforms/base.py
soma_cli/platforms/claude.py
soma_cli/platforms/copilot.py
soma_cli/platforms/gemini.py
soma_cli/platforms/kiro.py
soma_cli/platforms/mcp.py
soma_cli/starter_rules/cost-optimization.md
soma_cli/starter_rules/destructive-ops.md
soma_cli/starter_rules/git-workflow.md
soma_cli/starter_rules/providence.md
soma_cli/starter_rules/testing.md
soma_core/__init__.py
soma_core/arbitration.py
soma_core/cell_inventory.py
soma_core/command_safety.py
soma_core/defects.py
soma_core/enforcement.py
soma_core/errors.py
soma_core/evidence.py
soma_core/evidence_collector.py
soma_core/frontmatter.py
soma_core/homeostasis.py
soma_core/inference_provider.py
soma_core/insights.py
soma_core/locking.py
soma_core/metrics.py
soma_core/outcomes.py
soma_core/quarantine.py
soma_core/receipts.py
soma_core/scoring.py
soma_core/sentinels.py
soma_core/storage.py
soma_core/sweep_session.py
soma_core/sync.py
soma_core/telemetry.py
soma_core/verification_jobs.py
soma_core/workspace.py
soma_core/lifecycle/__init__.py
soma_core/lifecycle/constants.py
soma_core/lifecycle/creation.py
soma_core/lifecycle/decay.py
soma_core/lifecycle/parsers.py
soma_core/lifecycle/promotion.py
soma_core/lifecycle/quorum.py
soma_core/lifecycle/selection.py
soma_core/schemas/__init__.py
soma_core/schemas/cells.py
soma_core/schemas/lifecycle.py
soma_core/schemas/receipts.py
soma_core/schemas/telemetry.py
soma_core/verification/__init__.py
soma_core/verification/arbiter.py
soma_core/verification/branch_coverage.py
soma_core/verification/call_graph.py
soma_core/verification/checkpoint_checks.py
soma_core/verification/immune_verify.py
soma_core/verification/import_guard.py
soma_core/verification/mutation_tester.py
soma_core/verification/persistence_checker.py
soma_core/verification/quality_gate.py
soma_core/verification/review_adapter.py
soma_core/verification/runner.py
soma_core/verification/transcript_verifier.py
soma_governance.egg-info/PKG-INFO
soma_governance.egg-info/SOURCES.txt
soma_governance.egg-info/dependency_links.txt
soma_governance.egg-info/entry_points.txt
soma_governance.egg-info/requires.txt
soma_governance.egg-info/top_level.txt
soma_mcp/__init__.py
soma_mcp/__main__.py
soma_mcp/cell_cache.py
soma_mcp/integrity.py
soma_mcp/jit_engine.py
soma_mcp/security.py
soma_mcp/server.py
soma_mcp/tools.py
soma_sdk/__init__.py
soma_sdk/analysis.py
soma_sdk/cells.py
soma_sdk/errors.py
soma_sdk/governance.py
soma_sdk/hot_zones.py
soma_sdk/invariants.py
soma_sdk/py.typed
soma_sdk/scoring.py
soma_sdk/telemetry.py
tests/test_ambient_verification_telemetry.py
tests/test_arbitration.py
tests/test_architecture_decoupling.py
tests/test_bayesian_correctness.py
tests/test_bayesian_fitness.py
tests/test_bug_registry.py
tests/test_canonical_evidence_readers.py
tests/test_cell_cache.py
tests/test_cell_create.py
tests/test_cell_create_insight.py
tests/test_cell_creation_enforcement.py
tests/test_cell_creation_security.py
tests/test_cell_expiry.py
tests/test_cell_inventory.py
tests/test_cell_inventory_integration.py
tests/test_cell_transfer.py
tests/test_cells_bom.py
tests/test_checkpoint_fail_closed.py
tests/test_ci_outcome_reporter.py
tests/test_ci_supply_chain_security.py
tests/test_ci_workflows.py
tests/test_cli.py
tests/test_cli_checkpoint.py
tests/test_cli_demote.py
tests/test_cli_oracle.py
tests/test_cli_porcelain.py
tests/test_cli_promote.py
tests/test_cli_sanitize_c1.py
tests/test_cli_sync.py
tests/test_cli_verify.py
tests/test_cli_verify_test_harness.py
tests/test_command_safety.py
tests/test_command_safety_bundled_flags.py
tests/test_command_safety_trailing_slashes.py
tests/test_completion.py
tests/test_core_lifecycle.py
tests/test_credit_assignment.py
tests/test_crossover_structured.py
tests/test_decay_integration.py
tests/test_defects.py
tests/test_diagnose_hot_zones.py
tests/test_doctor.py
tests/test_doctor_fix_path.py
tests/test_doctor_mcp_launcher.py
tests/test_documentation_accuracy.py
tests/test_domain_errors.py
tests/test_enforce_engine_hardening.py
tests/test_enforce_hooks.py
tests/test_enforcement.py
tests/test_enforcement_ladder.py
tests/test_enzyme_deprecation.py
tests/test_error_handling.py
tests/test_escaped_defects_behavioral.py
tests/test_evidence_collector.py
tests/test_evidence_integrity.py
tests/test_evidence_transactions.py
tests/test_exponential_decay.py
tests/test_fcntl_optional.py
tests/test_fitness_updater.py
tests/test_frontmatter_engine.py
tests/test_gate_invariant_dsl.py
tests/test_gemini_afc_config.py
tests/test_genesis.py
tests/test_git_retro_harvest.py
tests/test_governance.py
tests/test_harness.py
tests/test_harvest.py
tests/test_homeostasis.py
tests/test_hooks_lifecycle.py
tests/test_hot_zones.py
tests/test_idempotency.py
tests/test_inference_provider.py
tests/test_init.py
tests/test_init_hooks.py
tests/test_init_pathcheck.py
tests/test_insight_capture.py
tests/test_insight_correlator.py
tests/test_insights.py
tests/test_integration_lifecycle.py
tests/test_jit_context_budget.py
tests/test_jit_engine_behavioral.py
tests/test_jit_preseed_constraints.py
tests/test_keyring_integration.py
tests/test_lazy_read_decay.py
tests/test_legacy_purged_regressions.py
tests/test_lifecycle.py
tests/test_lifecycle_hardening.py
tests/test_local_promotion_decay.py
tests/test_locking.py
tests/test_math_properties.py
tests/test_mcp_annotations.py
tests/test_mcp_async_verify.py
tests/test_mcp_capture_insight.py
tests/test_mcp_dispatch.py
tests/test_mcp_readonly_tools.py
tests/test_mcp_receipt_binding.py
tests/test_mcp_report_outcome.py
tests/test_mcp_session_auth_enforcement.py
tests/test_mcp_session_shutdown_harvesting.py
tests/test_mcp_tools_contract.py
tests/test_mcp_verify.py
tests/test_metrics.py
tests/test_module_contracts.py
tests/test_mulch_invariants.py
tests/test_oracle_ambient_health.py
tests/test_oracle_checkpoint.py
tests/test_outcome_engine.py
tests/test_outcome_engine_insights.py
tests/test_outcomes.py
tests/test_packaging_install_correctness.py
tests/test_pathcheck.py
tests/test_phase4_enzymes.py
tests/test_platform_adapters.py
tests/test_precommit_hook_fallback.py
tests/test_quality_gate.py
tests/test_quarantine.py
tests/test_quarantine_resilience.py
tests/test_quorum.py
tests/test_receipts.py
tests/test_release_workflow.py
tests/test_report.py
tests/test_review_adapter.py
tests/test_review_intensity.py
tests/test_rule_content.py
tests/test_rule_metadata.py
tests/test_schemas.py
tests/test_scoring.py
tests/test_sdk_analysis.py
tests/test_sdk_behavioral.py
tests/test_security.py
tests/test_security_policy.py
tests/test_security_ssrf_config.py
tests/test_sentinels.py
tests/test_static_invariants.py
tests/test_status.py
tests/test_status_claude_md.py
tests/test_storage.py
tests/test_supercell_cells.py
tests/test_sweep_session.py
tests/test_sync.py
tests/test_telemetry.py
tests/test_threshold_recalibration.py
tests/test_transcript_verifier_insights.py
tests/test_transfer.py
tests/test_worker_lifecycle.py
tests/test_workspace.py
tests/test_workspace_model.py
tests/test_worktree_hooks.py