Coverage report:
90%
hide covered
Files
Functions
Classes
coverage.py v7.5.1
, created at 2024-06-12 16:32 -0400
File
class
statements
missing
excluded
coverage
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/__init__.py
(no class)
13
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py
AlignRecord
11
2
0
82%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py
GapStore
23
4
0
83%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py
AlignDb
42
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py
(no class)
45
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_config.py
Config
44
10
0
77%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_config.py
InstalledConfig
15
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_config.py
(no class)
66
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_db_base.py
SqliteDbMixin
38
3
0
92%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_db_base.py
Hdf5Mixin
16
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_db_base.py
(no class)
30
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py
valid_gff3_file
2
2
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0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py
valid_compara_align
2
2
0
0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py
valid_compara_homology
2
2
0
0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py
(no class)
30
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_emf.py
(no class)
7
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_faster_fasta.py
converter
4
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_faster_fasta.py
(no class)
10
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_ftp_download.py
(no class)
12
0
1
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
EnsemblGffRecord
22
1
0
95%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
EnsemblGffDb
103
7
0
93%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
fasta_to_hdf5
13
13
0
0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
SeqsDataABC
5
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
str2arr
9
1
0
89%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
arr2str
9
1
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89%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
SeqsDataHdf5
39
5
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87%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
Genome
39
8
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79%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py
(no class)
129
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/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py
species_genes
7
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100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py
homolog_group
21
7
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67%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py
HomologyDb
41
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100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py
load_homologies
9
0
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100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py
collect_seqs
26
26
0
0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py
(no class)
71
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_install.py
(no class)
15
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_maf.py
load_align_records
14
1
0
93%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_maf.py
(no class)
18
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py
EnsemblDbName
28
1
0
96%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py
EmfName
8
2
0
75%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py
MafName
9
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py
(no class)
42
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py
register_ensembl_site_map
9
2
0
78%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py
SiteMapABC
5
3
0
40%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py
SiteMap
0
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py
EnsemblPrimary
3
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py
(no class)
37
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_species.py
SpeciesNameMap
90
15
0
83%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_species.py
(no class)
30
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py
CaseInsensitiveString
7
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py
atomic_write
35
35
0
0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py
SerialisableMixin
8
0
0
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py
(no class)
84
0
1
100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/cli.py
(no class)
92
3
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97%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/data/__init__.py
(no class)
0
0
0
100%
Total
1489
156
2
90%
No items found using the specified filter.