Coverage report: 90%

Files Functions Classes

coverage.py v7.5.1, created at 2024-06-12 16:32 -0400

File class statements missing excluded coverage
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/__init__.py (no class) 13 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py AlignRecord 11 2 0 82%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py GapStore 23 4 0 83%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py AlignDb 42 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_aligndb.py (no class) 45 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_config.py Config 44 10 0 77%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_config.py InstalledConfig 15 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_config.py (no class) 66 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_db_base.py SqliteDbMixin 38 3 0 92%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_db_base.py Hdf5Mixin 16 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_db_base.py (no class) 30 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py valid_gff3_file 2 2 0 0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py valid_compara_align 2 2 0 0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py valid_compara_homology 2 2 0 0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_download.py (no class) 30 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_emf.py (no class) 7 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_faster_fasta.py converter 4 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_faster_fasta.py (no class) 10 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_ftp_download.py (no class) 12 0 1 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py EnsemblGffRecord 22 1 0 95%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py EnsemblGffDb 103 7 0 93%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py fasta_to_hdf5 13 13 0 0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py SeqsDataABC 5 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py str2arr 9 1 0 89%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py arr2str 9 1 0 89%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py SeqsDataHdf5 39 5 0 87%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py Genome 39 8 0 79%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_genomedb.py (no class) 129 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py species_genes 7 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py homolog_group 21 7 0 67%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py HomologyDb 41 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py load_homologies 9 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py collect_seqs 26 26 0 0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_homologydb.py (no class) 71 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_install.py (no class) 15 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_maf.py load_align_records 14 1 0 93%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_maf.py (no class) 18 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py EnsemblDbName 28 1 0 96%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py EmfName 8 2 0 75%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py MafName 9 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_name.py (no class) 42 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py register_ensembl_site_map 9 2 0 78%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py SiteMapABC 5 3 0 40%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py SiteMap 0 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py EnsemblPrimary 3 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_site_map.py (no class) 37 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_species.py SpeciesNameMap 90 15 0 83%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_species.py (no class) 30 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py CaseInsensitiveString 7 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py atomic_write 35 35 0 0%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py SerialisableMixin 8 0 0 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/_util.py (no class) 84 0 1 100%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/cli.py (no class) 92 3 0 97%
/Users/gavin/repos/EnsemblLite/src/ensembl_lite/data/__init__.py (no class) 0 0 0 100%
Total   1489 156 2 90%

No items found using the specified filter.