{% extends "variants/variants_layout.html" %}
{% from "variants/utils.html" import callers_cell, cell_rank, filter_form_footer, sv_filters, variant_link_href, variant_rank_score %}
{% from "variants/components.html" import cell_models, frequency_cell_general, observed_cell_general, overlapping_cell, variant_gene_symbols_cell, variant_funct_anno_cell %}

{% block category_title %}
  Structural variants
{% endblock %}

{% block variants_form_action %}
  {{url_for('variants.sv_variants', institute_id=institute._id, case_name=case.display_name)}}
{% endblock %}

{% block variants_filter %}
  {{ sv_filters(form, institute, case) }}
{% endblock %}

{% block variants_filter_form_footer %}
  {{ filter_form_footer(form, result_size, total_variants, page, variants|length, institute) }}
{% endblock %}

{% block variants_table_header %}
  <tr>
    <th scope="col" style="width:3%"></th>
    <th scope="col" title="Rank position">Rank</th>
    <th scope="col" data-bs-toggle="tooltip" title="Rank score (normalized rank score in the range 0-1)">Score</th>
    <th scope="col">Callers</th>
    <th scope="col">Type</th>
    <th scope="col" title="Chromosome">Chr</th>
    <th scope="col">Start</th>
    <th scope="col">End</th>
    <th scope="col">Length</th>
    <th scope="col" title="Population Frequency">Pop Freq</th>
    <th scope="col" title="Observed database matches">Observed</th>
    <th scope="col">Gene(s)</th>
    <th scope="col" title="Functional annotation">Function</th>
    <th scope="col" style="width:14%" title="Inheritance models">Inheritance model</th>
    <th scope="col" title="Gene overlapping variants in affected individuals">Overlap</th>
  </tr>
{% endblock %}

{% block variants_table_rows %}
  {% for variant in variants %}
    {{ variant_row(variant, inherit_palette) }}
  {% else %}
    <tr>
      <td colspan="14">No matching variants</td>
    </tr>
  {% endfor %}
{% endblock %}

{% macro variant_row(variant, inherit_palette) %}
  <tr data-target="_blank" data-href="{{ variant_link_href(variant, institute, case) }}"
    {% if variant.dismiss_variant %}
      class="dismiss">
    {% elif 'causatives' in case and variant._id in case.causatives %}
      class="causative">
    {% else %}
      >
    {% endif %}
    <td class="no-row-click"><input form="filters_form" type="checkbox" value="{{variant._id}}" name="dismiss" onclick="enableDismiss()"></td>
    <td class="text-start">
      {{ cell_rank(variant, institute, case, form, manual_rank_options) }}
    </td>
    <td class="text-start">{{variant_rank_score(variant)}}</td>
    <td>
      {{ callers_cell(variant) }}
    </td>
    <td>{{ variant.sub_category|upper }}</td>
    <td>{{ variant.chromosome if variant.chromosome == variant.end_chrom else variant.chromosome+'-'+variant.end_chrom }}</td>
    <td>{% if variant.chromosome != variant.end_chrom %}<span class="text-body"></span><b>{{ variant.chromosome }}</b>:</span>{% endif %}<span style="white-space: nowrap;">{{ variant.position|human_longint|safe }}</span></td>
    <td>{% if variant.chromosome != variant.end_chrom %}<span class="text-body"><b>{{ variant.end_chrom }}</b>:</span>{% endif %}<span style="white-space: nowrap;">{{ 'inf' if variant.end == 100000000000 else variant.end|human_longint|safe }}</span></td>
    <td class="text-end"><span style="white-space: nowrap;">{{ '-' if variant.length == 100000000000 else variant.length|human_longint|safe}}</span></td>
    <td>
      {{ frequency_cell_general(variant) }}
    </td>
    <td>{{observed_cell_general(variant)}}</td>
    <td>
      {{ variant_gene_symbols_cell(variant, inherit_palette) }}
    </td>
    <td style="word-wrap:break-word;">
      {{ variant_funct_anno_cell(variant) }}
    </td>
    <td>{{ cell_models(variant, genetic_models_palette) }}</td>
    <td>{{ overlapping_cell(variant, institute, case) }}</td>
  </tr>
{% endmacro %}