LICENSE
README.md
pyproject.toml
src/zer0pa_synbio/__init__.py
src/zer0pa_synbio/boundary.py
src/zer0pa_synbio/envelope.py
src/zer0pa_synbio/types.py
src/zer0pa_synbio.egg-info/PKG-INFO
src/zer0pa_synbio.egg-info/SOURCES.txt
src/zer0pa_synbio.egg-info/dependency_links.txt
src/zer0pa_synbio.egg-info/entry_points.txt
src/zer0pa_synbio.egg-info/requires.txt
src/zer0pa_synbio.egg-info/top_level.txt
src/zer0pa_synbio/adapters/__init__.py
src/zer0pa_synbio/adapters/l1_zpe/__init__.py
src/zer0pa_synbio/adapters/l1_zpe/esm2_real.py
src/zer0pa_synbio/adapters/l2_lirc/__init__.py
src/zer0pa_synbio/adapters/l2_lirc/build.py
src/zer0pa_synbio/adapters/l2_lirc/rhea_slice.py
src/zer0pa_synbio/adapters/l3_5_ranking_gate/__init__.py
src/zer0pa_synbio/adapters/l3_retrosynthesis/__init__.py
src/zer0pa_synbio/adapters/l4_5_unknown_enzyme/__init__.py
src/zer0pa_synbio/adapters/l4_5_unknown_enzyme/runpod_inference.py
src/zer0pa_synbio/adapters/l4_fba/__init__.py
src/zer0pa_synbio/adapters/l4_kinetics/__init__.py
src/zer0pa_synbio/adapters/l4_thermodynamics/__init__.py
src/zer0pa_synbio/adapters/l5_mfmo/__init__.py
src/zer0pa_synbio/adapters/l5_mfmo/botorch_worker.py
src/zer0pa_synbio/adapters/l5_oed/__init__.py
src/zer0pa_synbio/adapters/l6_build_cellfree_txtl/__init__.py
src/zer0pa_synbio/adapters/l6_host_engineering/__init__.py
src/zer0pa_synbio/adapters/l6_host_engineering/salis_rbs_subprocess.py
src/zer0pa_synbio/adapters/l7_dossier/__init__.py
src/zer0pa_synbio/audit/__init__.py
src/zer0pa_synbio/audit/verify.py
src/zer0pa_synbio/cekm/__init__.py
src/zer0pa_synbio/cekm/model.py
src/zer0pa_synbio/cekm/train.py
src/zer0pa_synbio/cekm/loaders/__init__.py
src/zer0pa_synbio/cekm/loaders/brenda_bulk.py
src/zer0pa_synbio/cekm/loaders/enzyextract.py
src/zer0pa_synbio/cekm/loaders/gotenzymes2.py
src/zer0pa_synbio/cekm/loaders/proteingym.py
src/zer0pa_synbio/cli/__init__.py
src/zer0pa_synbio/cli/__main__.py
src/zer0pa_synbio/disagreement/__init__.py
src/zer0pa_synbio/falsifiers/__init__.py
src/zer0pa_synbio/falsifiers/checks.py
src/zer0pa_synbio/kg/__init__.py
src/zer0pa_synbio/pathgym/__init__.py
src/zer0pa_synbio/plug_replaceability/__init__.py
src/zer0pa_synbio/rest/__init__.py
src/zer0pa_synbio/runpod_inference/__init__.py
src/zer0pa_synbio/runpod_inference/mace_off_binding.py
src/zer0pa_synbio/runpod_inference/rfdiffusion2_design.py
src/zer0pa_synbio/tda/__init__.py
src/zer0pa_synbio/tda/simulator.py