LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
MICAFlow.egg-info/PKG-INFO
MICAFlow.egg-info/SOURCES.txt
MICAFlow.egg-info/dependency_links.txt
MICAFlow.egg-info/entry_points.txt
MICAFlow.egg-info/requires.txt
MICAFlow.egg-info/top_level.txt
micaflow/__init__.py
micaflow/cli.py
micaflow/resources/Snakefile
micaflow/resources/config.yaml
micaflow/resources/config_BIDS.yaml
micaflow/scripts/SDC.py
micaflow/scripts/__init__.py
micaflow/scripts/apply_SDC.py
micaflow/scripts/apply_warp.py
micaflow/scripts/bet.py
micaflow/scripts/bias_correction.py
micaflow/scripts/calculate_dice.py
micaflow/scripts/compute_fa_md.py
micaflow/scripts/coregister.py
micaflow/scripts/denoise.py
micaflow/scripts/extract_b0.py
micaflow/scripts/motion_correction.py
micaflow/scripts/normalize.py
micaflow/scripts/synth_b0.py
micaflow/scripts/synthseg.py
micaflow/scripts/texture_generation.py
micaflow/scripts/util_bids_pathing.py
micaflow/scripts/synb0_DISCO/__init__.py
micaflow/scripts/synb0_DISCO/inference.py
micaflow/scripts/synb0_DISCO/model.py
micaflow/scripts/synb0_DISCO/util.py
tests/test_cli_interface.py
tests/test_util_bids_pathing.py