h5py>=3.9.0
numpy>=1.24.4
gffutils>=0.12
pysam>=0.22.0
pandas>=1.5.3
pyfaidx>=0.8.1.1
tqdm>=4.65.2
torch>=2.2.1
torchaudio>=2.2.1
torchvision>=0.17.1
scikit-learn>=1.4.1.post1
biopython>=1.83
matplotlib>=3.8.3
matplotlib-inline>=0.1.7
psutil>=5.9.2
mappy>=2.28

[dev]
pytest>=7
pytest-cov>=4
ruff>=0.4
pre-commit>=3

[test]
pytest>=7
pytest-cov>=4
