LICENSE
README.md
pyproject.toml
adabmDCA/__init__.py
adabmDCA/_validation.py
adabmDCA/alignment.py
adabmDCA/alphabet.py
adabmDCA/checkpoint.py
adabmDCA/cli.py
adabmDCA/cobalt.py
adabmDCA/dataset.py
adabmDCA/dca.py
adabmDCA/fasta.py
adabmDCA/functional.py
adabmDCA/graph.py
adabmDCA/input_loading.py
adabmDCA/io.py
adabmDCA/parser.py
adabmDCA/plot.py
adabmDCA/plot_training_log.py
adabmDCA/preprocessing.py
adabmDCA/resampling.py
adabmDCA/sampling.py
adabmDCA/sampling_triton.py
adabmDCA/statmech.py
adabmDCA/stats.py
adabmDCA/training.py
adabmDCA/training_config.py
adabmDCA/training_control.py
adabmDCA/utils.py
adabmDCA.egg-info/PKG-INFO
adabmDCA.egg-info/SOURCES.txt
adabmDCA.egg-info/dependency_links.txt
adabmDCA.egg-info/entry_points.txt
adabmDCA.egg-info/requires.txt
adabmDCA.egg-info/top_level.txt
adabmDCA/api/__init__.py
adabmDCA/api/contacts.py
adabmDCA/api/entropy.py
adabmDCA/api/exceptions.py
adabmDCA/api/input_loading.py
adabmDCA/api/model.py
adabmDCA/api/mutations.py
adabmDCA/api/reintegration.py
adabmDCA/api/results.py
adabmDCA/api/runtime.py
adabmDCA/api/sampling.py
adabmDCA/api/scoring.py
adabmDCA/api/serialization.py
adabmDCA/api/splitting.py
adabmDCA/api/training.py
adabmDCA/scripts/__init__.py
adabmDCA/scripts/_frontend.py
adabmDCA/scripts/_utils.py
adabmDCA/scripts/contacts.py
adabmDCA/scripts/convert_format_params.py
adabmDCA/scripts/dms.py
adabmDCA/scripts/energies.py
adabmDCA/scripts/preprocess.py
adabmDCA/scripts/profmark.py
adabmDCA/scripts/reintegrate.py
adabmDCA/scripts/sample.py
adabmDCA/scripts/td_integration.py
adabmDCA/scripts/train.py
tests/test_api.py
tests/test_auto_alphabet.py
tests/test_bfloat16_training.py
tests/test_cli.py
tests/test_dca.py
tests/test_deprecations.py
tests/test_entropy_targets.py
tests/test_error_handling.py
tests/test_gpu_gate.py
tests/test_input_loading.py
tests/test_param_io.py
tests/test_plot.py
tests/test_preprocessing.py
tests/test_sampling.py
tests/test_sampling_optimized.py
tests/test_serialization.py
tests/test_training_config.py
tests/test_training_control.py
tests/test_training_logging.py
tests/test_validation.py
tests/test_workflow_apis.py