LICENSE
README.md
pyproject.toml
src/isoform_dominance/__init__.py
src/isoform_dominance/_selftest.py
src/isoform_dominance/annotate.py
src/isoform_dominance/cli.py
src/isoform_dominance/contamination.py
src/isoform_dominance/ensembl.py
src/isoform_dominance/extract.py
src/isoform_dominance/identifiability.py
src/isoform_dominance/index_scope.py
src/isoform_dominance/io.py
src/isoform_dominance/stats.py
src/isoform_dominance.egg-info/PKG-INFO
src/isoform_dominance.egg-info/SOURCES.txt
src/isoform_dominance.egg-info/dependency_links.txt
src/isoform_dominance.egg-info/entry_points.txt
src/isoform_dominance.egg-info/requires.txt
src/isoform_dominance.egg-info/top_level.txt
tests/test_annotate.py
tests/test_annotate_fixture.py
tests/test_annotate_scope.py
tests/test_annotation_release.py
tests/test_archive_redirect.py
tests/test_beyond_linear.py
tests/test_class_length_and_position.py
tests/test_cli.py
tests/test_decoys.py
tests/test_default_background_note.py
tests/test_dependencies.py
tests/test_edge.py
tests/test_ensembl_http.py
tests/test_ensembl_release.py
tests/test_estimability_invariants.py
tests/test_extract_missing.py
tests/test_extract_order.py
tests/test_fasta_competitors.py
tests/test_fasta_records.py
tests/test_fasta_scan.py
tests/test_fetch_order.py
tests/test_gene_background.py
tests/test_gene_choice.py
tests/test_gls_precision.py
tests/test_identical_background.py
tests/test_identical_copies.py
tests/test_identifiability.py
tests/test_identifiability_model.py
tests/test_index_meta.py
tests/test_index_scope.py
tests/test_input_errors.py
tests/test_nightly_workflow.py
tests/test_same_answer_faster.py
tests/test_saved_inputs.py
tests/test_sbatch.py
tests/test_selftest.py
tests/test_silent_wrong_answers.py
tests/test_stats_combination.py
tests/test_surviving_mutants.py
tests/test_whole_index_rule.py