Completed 27 Bytes/27 Bytes (163 Bytes/s) with 1 file(s) remaining
upload: ../../../../../../var/folders/rk/2n95m40s1zs48qr48ynwhxwm0000gn/T/tmptbydv2km to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260529T210105Z_7b495569/_write_test.txt
delete: s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260529T210105Z_7b495569/_write_test.txt
Completed 442 Bytes/442 Bytes (2.1 KiB/s) with 1 file(s) remaining
upload: docs/plans/20260526T224018Z_blahab44_inputs/20260529T210105Z_7b495569_samples.tsv to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260529T210105Z_7b495569/20260529T210105Z_7b495569_samples.tsv
Completed 777 Bytes/777 Bytes (4.7 KiB/s) with 1 file(s) remaining
upload: docs/plans/20260526T224018Z_blahab44_inputs/20260529T210105Z_7b495569_units.tsv to s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260529T210105Z_7b495569/20260529T210105Z_7b495569_units.tsv
Precheck passed: rows checked=1, samples checked=1, source objects checked=20, concordance directories checked=1.
Remote staging completed successfully.
Remote FSx stage directory: /fsx/staging/staged_external_sequencing_data/remote_stage_20260529T210105Z_7b495569
Staging DRA: dra-0070a16e5a07d528a
Staging DRA lifecycle: AVAILABLE
Staged files (0):
Generated configuration files:
  samples.tsv -> s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260529T210105Z_7b495569/20260529T210105Z_7b495569_samples.tsv
  units.tsv   -> s3://lsmc-ssf-sequencing-data/staged_external_data/remote_stage_20260529T210105Z_7b495569/20260529T210105Z_7b495569_units.tsv
DAY-EC activated.
DAY-EC activated.
__DAYLILY_STAGE_DIR__=/fsx/staging/staged_external_sequencing_data/remote_stage_20260529T210105Z_7b495569
__DAYLILY_STAGE_SAMPLES__=/fsx/staging/staged_external_sequencing_data/remote_stage_20260529T210105Z_7b495569/20260529T210105Z_7b495569_samples.tsv
__DAYLILY_STAGE_UNITS__=/fsx/staging/staged_external_sequencing_data/remote_stage_20260529T210105Z_7b495569/20260529T210105Z_7b495569_units.tsv
DAY-EC activated.
DAY-EC activated.
__DAYLILY_SESSION__=ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun
__DAYLILY_RUN_DIR__=/home/ubuntu/daylily-runs/ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun
__DAYLILY_REPO_PATH__=/fsx/analysis_results/ubuntu/ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun/daylily-omics-analysis
Tmux session 'ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun' created on the head node.
Run state directory: /home/ubuntu/daylily-runs/ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun
Workflow repo path: /fsx/analysis_results/ubuntu/ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun/daylily-omics-analysis
Reconnect with: daylily-ssh-into-headnode --profile lsmc --region us-west-2 --cluster dyec-test
Then run: tmux attach -t ccv20260529r6_ultima_snv_alignstats_kitchensink_dryrun
Samples run receipt: /Users/jmajor/.codex/worktrees/dyec-fsx-dra-mounts/daylily-ephemeral-cluster/docs/plans/20260526T224018Z_blahab44_inputs/20260529T210105Z_7b495569_samples_run_receipt.json
