DAY-EC activated.
DAY-EC activated.
=== ccv20260529r15_illumina_bclconvert status ===
{
  "command": "bin/day_run produce_bclconvert_fastqs_and_metrics -p -j 20 -k --config run_context_file=config/runs.tsv bootstrap_bclconvert=true",
  "completed_at": null,
  "exit_code": null,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r15_illumina_bclconvert/daylily-omics-analysis",
  "session_name": "ccv20260529r15_illumina_bclconvert",
  "started_at": "2026-05-30T04:09:14Z"
}
=== ccv20260529r15_illumina_bclconvert bclconvert log tail ===
run_bclconvert started: 2026-05-30T04:33:29+00:00
host: i192mem-dy-all-1
threads: 192
resources_mem_mb: 180000
TMPDIR: /dev/shm
staging_mode: s3_dev_shm
scratch_root: /dev/shm/dayoa_bclconvert
bcl_input_directory: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
source_s3_uri: s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/LH01106/2026/20260514_LH01106_0009_B23TVLGLT4/
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
192
Filesystem               Size  Used Avail Use% Mounted on
tmpfs                    605G     0  605G   0% /dev/shm
10.0.1.96@tcp:/d4tzvb4v  8.8T  185G  8.6T   3% /fsx
/usr/bin/singularity
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
/home/ubuntu/miniconda3/envs/DAY-EC/bin/aws
s3_stage_submit_profile: lsmc
s3_stage_credential_mode: compute_instance_role
{
    "UserId": "AROARSU7KMWV6ITKJPKEZ:i-01f36bfbb19aa60f4",
    "Account": "108782052779",
    "Arn": "arn:aws:sts::108782052779:assumed-role/dyec-test-ComputeFleetQueuesNe-Role208459e33242dc54-WlVzsTcibg8p/i-01f36bfbb19aa60f4"
}
scratch_dir: /dev/shm/dayoa_bclconvert/2651.24177
scratch_input_disk_bytes: 329347072
scratch_input_apparent_bytes: 8442068270195
scratch_required_bytes: 2391130112
scratch_available_bytes: 649086369792
Staging BCL run directory from S3 to scratch: 2026-05-30T04:33:55+00:00
s3_stage_lanes: L001 L002 L003 L004 L005 L006 L007 L008
=== ccv20260529r15_illumina_run_qc_bclconvert status ===
{
  "command": "bin/day_run produce_illumina_run_qc_and_bclconvert -p -j 20 -k --config run_context_file=config/runs.tsv bootstrap_bclconvert=true",
  "completed_at": null,
  "exit_code": null,
  "repo_path": "/fsx/analysis_results/ubuntu/ccv20260529r15_illumina_run_qc_bclconvert/daylily-omics-analysis",
  "session_name": "ccv20260529r15_illumina_run_qc_bclconvert",
  "started_at": "2026-05-30T04:09:14Z"
}
=== ccv20260529r15_illumina_run_qc_bclconvert bclconvert log tail ===
run_bclconvert started: 2026-05-30T04:33:19+00:00
host: i192mem-dy-all-2
threads: 192
resources_mem_mb: 180000
TMPDIR: /dev/shm
staging_mode: s3_dev_shm
scratch_root: /dev/shm/dayoa_bclconvert
bcl_input_directory: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
source_s3_uri: s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/LH01106/2026/20260514_LH01106_0009_B23TVLGLT4/
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
192
Filesystem               Size  Used Avail Use% Mounted on
tmpfs                    605G     0  605G   0% /dev/shm
10.0.1.96@tcp:/d4tzvb4v  8.8T  185G  8.6T   3% /fsx
/usr/bin/singularity
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
/home/ubuntu/miniconda3/envs/DAY-EC/bin/aws
s3_stage_submit_profile: lsmc
s3_stage_credential_mode: compute_instance_role
{
    "UserId": "AROARSU7KMWV6ITKJPKEZ:i-0fefccc9a60b37baa",
    "Account": "108782052779",
    "Arn": "arn:aws:sts::108782052779:assumed-role/dyec-test-ComputeFleetQueuesNe-Role208459e33242dc54-WlVzsTcibg8p/i-0fefccc9a60b37baa"
}
scratch_dir: /dev/shm/dayoa_bclconvert/2650.29359
scratch_input_disk_bytes: 329347072
scratch_input_apparent_bytes: 8442068270195
scratch_required_bytes: 2391130112
scratch_available_bytes: 649086369792
Staging BCL run directory from S3 to scratch: 2026-05-30T04:33:43+00:00
s3_stage_lanes: L001 L002 L003 L004 L005 L006 L007 L008
=== run mount ls ===
drwxr-xr-x 4 root root 33280 May 30 02:45 /fsx/run_dir_mounts/20260513_ONT_HG003
drwxr-xr-x 9 root root 25600 May 30 02:17 /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4
=== df ===
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  185G  8.6T   3% /fsx
tmpfs                    199G     0  199G   0% /dev/shm
=== slurm ===
JOBID PARTITION CPUS ST NODELIST MIN_MEMORY TIME NODES NAME
2651 i192mem 192 R i192mem-dy-all-1 180000M 16:51 1 run_bclconvert-run_bclconvert
2650 i192mem 192 R i192mem-dy-all-2 180000M 17:01 1 run_bclconvert-run_bclconvert
