DAY-EC activated.
DAY-EC activated.
host:
i192mem-dy-all-1
Sat May 30 08:08:13 UTC 2026

job_processes:
    PID    PPID STAT     ELAPSED %CPU %MEM COMMAND
  34407   34406 Sl      01:34:31  0.4  0.0 python
  35306   34407 S       01:34:25  0.0  0.0 bash
  37926   35306 S       01:34:07  0.0  0.0 xargs
  88086   37926 S          31:50  0.0  0.0 bash
  88219   37926 S          31:35  0.0  0.0 bash
  88523   37926 S          30:54  0.0  0.0 bash
  89106   37926 S          29:29  0.0  0.0 bash
  89185   37926 S          29:20  0.0  0.0 bash
  89304   37926 S          29:07  0.0  0.0 bash
  89501   37926 S          28:30  0.0  0.0 bash
  89729   37926 S          28:07  0.0  0.0 bash
  89745   37926 S          28:07  0.0  0.0 bash
  89911   37926 S          27:38  0.0  0.0 bash
  90133   37926 S          27:11  0.0  0.0 bash
  90208   37926 S          26:59  0.0  0.0 bash
  90301   37926 S          26:46  0.0  0.0 bash
  90450   37926 S          26:26  0.0  0.0 bash
  90527   37926 S          26:18  0.0  0.0 bash
  90543   37926 S          26:15  0.0  0.0 bash
  90596   37926 S          26:10  0.0  0.0 bash
  90718   37926 S          25:52  0.0  0.0 bash
  90780   37926 S          25:43  0.0  0.0 bash
  90968   37926 S          25:28  0.0  0.0 bash
  91189   37926 S          24:56  0.0  0.0 bash
  91309   37926 S          24:42  0.0  0.0 bash
  91356   37926 S          24:29  0.0  0.0 bash
  91420   37926 S          24:17  0.0  0.0 bash
  91438   37926 S          24:16  0.0  0.0 bash
 100486   88086 I          00:37  0.9  0.0 cp
 100588   90596 D          00:29  1.3  0.0 cp
 100598   91356 I          00:28  1.5  0.0 cp
 100610   90301 I          00:17  1.7  0.0 cp
 100623   89501 I          00:15  1.6  0.0 cp
 100689   88219 I          00:10  0.0  0.0 cp
 100698   89185 D          00:09  0.8  0.0 cp
 100701   89106 I          00:09  0.0  0.0 cp
 100704   90527 I          00:08  0.0  0.0 cp
 100707   89911 I          00:08  0.0  0.0 cp
 100713   89745 I          00:08  2.2  0.0 cp
 100716   90780 I          00:08  0.0  0.0 cp
 100725   89304 I          00:07  0.0  0.0 cp
 100731   90718 I          00:07  0.0  0.0 cp
 100734   89729 I          00:07  0.0  0.0 cp
 100737   91309 I          00:07  0.0  0.0 cp
 100743   90543 I          00:06  8.8  0.0 cp
 100746   91438 I          00:06  0.0  0.0 cp
 100783   90133 I          00:06  0.0  0.0 cp
 100814   90968 I          00:05  0.0  0.0 cp
 100817   90208 I          00:05  0.0  0.0 cp
 100820   91189 I          00:05  0.0  0.0 cp
 100828   88523 I          00:05  0.0  0.0 cp
 100846   90450 I          00:04  0.0  0.0 cp
 100862   91420 I          00:04  0.0  0.0 cp

scratch_summary:
3.0T	/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
11302
254
1780128510.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C11.1/L006_2.cbcl
1780128510.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/s_6_2219.filter
1780128511.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L001/s_1_1120.filter
1780128511.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L001/s_1_2160.filter
1780128511.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L001/s_1_2331.filter
1780128511.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L001/s_1_2371.filter
1780128512.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L001/s_1_1331.filter
1780128512.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C220.1/L006_2.cbcl
1780128512.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C75.1/L006_2.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L001/C156.1/L001_1.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C169.1/L006_1.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C17.1/L006_2.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C170.1/L006_2.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C183.1/L006_1.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C281.1/L006_1.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C292.1/L006_1.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C311.1/L006_2.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C35.1/L006_1.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C41.1/L006_2.cbcl
1780128513.0000000000 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/run/Data/Intensities/BaseCalls/L006/C61.1/L006_1.cbcl

rsync_logs:
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
2576 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/cycle_dirs.txt
/fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul
0 /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306/rsync_logs/basecall_files.nul

run_log_tail:
run_bclconvert started: 2026-05-30T06:33:47+00:00
host: i192mem-dy-all-1
threads: 192
resources_mem_mb: 180000
TMPDIR: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
staging_mode: mounted_dev_shm
scratch_root: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch
bcl_input_directory: /fsx/run_dir_mounts/20260514_LH01106_0009_B23TVLGLT4/
source_s3_uri: s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/LH01106/2026/20260514_LH01106_0009_B23TVLGLT4/
output_directory: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/fastqs
192
Filesystem               Size  Used Avail Use% Mounted on
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
10.0.1.96@tcp:/d4tzvb4v  8.8T  195G  8.6T   3% /fsx
/usr/bin/singularity
INFO:    Using cached SIF image
bcl-convert Version 00.000.000.4.0.3
Copyright (c) 2014-2018 Illumina, Inc.
scratch_dir: /fsx/analysis_results/ubuntu/ccv20260529r26_illumina_bclconvert/daylily-omics-analysis/.bclconvert_scratch/2660.35306
scratch_input_basis: mounted_metadata_plus_lane_root
scratch_root_file_bytes: 4536017
scratch_intensities_file_bytes: 52032652
scratch_lane_root_disk_bytes: 92860928
scratch_input_disk_bytes: 149429597
scratch_input_apparent_bytes: 149429597
scratch_required_bytes: 1671460212
scratch_available_bytes: 9361524129792
Staging mounted BCL run directory to scratch: 2026-05-30T06:33:54+00:00
mounted_stage_lanes: L001 L002 L003 L004 L005 L006 L007 L008
mounted_stage_jobs: 64
mounted_stage_cycle_dirs: 2576
mounted_stage_regular_files: 11424
Copying mounted BCL files with sharded cp: 2026-05-30T06:34:06+00:00

slurm:
             JOBID PARTITION         NAME     USER ST       TIME  NODES NODELIST(REASON)
              2853      i192 vep_chromoso   ubuntu  R       4:55      1 i192-dy-all-1
              2867   i192mem parse_vcfeva   ubuntu  R       0:04      1 i192mem-dy-all-2
              2868   i192mem parse_vcfeva   ubuntu  R       0:04      1 i192mem-dy-all-2
              2866   i192mem parse_vcfeva   ubuntu  R       0:05      1 i192mem-dy-all-2
              2865   i192mem parse_vcfeva   ubuntu  R       0:14      1 i192mem-dy-all-2
              2863   i192mem parse_vcfeva   ubuntu  R       0:15      1 i192mem-dy-all-2
              2660   i192mem run_bclconve   ubuntu  R    1:34:54      1 i192mem-dy-all-1
