DAY-EC activated.
DAY-EC activated.
    wildcards: lane=L007
    threads: 192
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=192, time=5440, partition=i192mem, vcpu=192, distribution=block, exclusive=--exclusive, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 7 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L007.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/bclconvert.done
Submitted job 9 with external jobid '3530'.

[Sat May 30 14:21:59 2026]
rule run_bclconvert_lane:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L004.log
    jobid: 6
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L004.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/fastq_list.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L004
    threads: 192
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=192, time=5440, partition=i192mem, vcpu=192, distribution=block, exclusive=--exclusive, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L004.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/bclconvert.done
Submitted job 6 with external jobid '3531'.

[Sat May 30 14:21:59 2026]
rule run_bclconvert_lane:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L001.log
    jobid: 3
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L001.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L001
    threads: 192
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=192, time=5440, partition=i192mem, vcpu=192, distribution=block, exclusive=--exclusive, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 1 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L001.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/bclconvert.done
Submitted job 3 with external jobid '3532'.

[Sat May 30 14:21:59 2026]
rule run_bclconvert_lane:
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L002.log
    jobid: 4
    benchmark: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/benchmarks/run_bclconvert.L002.bench.tsv
    reason: Missing output files: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/fastq_list.csv; Input files updated by another job: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok
    wildcards: lane=L002
    threads: 192
    resources: mem_mb=180000, mem_mib=171662, disk_mb=1000, disk_mib=954, tmpdir=<TBD>, threads=192, time=5440, partition=i192mem, vcpu=192, distribution=block, exclusive=--exclusive, constraint=, exclude=, include=

TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 2 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L002.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/bclconvert.done
Submitted job 4 with external jobid '3533'.
[Sat May 30 14:22:09 2026]
Error in rule run_bclconvert_lane:
    jobid: 8
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L006.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 6 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L006.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L006/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L006/bclconvert.done
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
    cluster_jobid: 3529

Error executing rule run_bclconvert_lane on cluster (jobid: 8, external: 3529, jobscript: /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/.snakemake/tmp.xg700ecs/snakejob.run_bclconvert_lane.8.sh). For error details see the cluster log and the log files of the involved rule(s).
[Sat May 30 14:22:09 2026]
Error in rule run_bclconvert_lane:
    jobid: 9
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L007.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 7 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L007.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L007/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L007/bclconvert.done
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
    cluster_jobid: 3530

Error executing rule run_bclconvert_lane on cluster (jobid: 9, external: 3530, jobscript: /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/.snakemake/tmp.xg700ecs/snakejob.run_bclconvert_lane.9.sh). For error details see the cluster log and the log files of the involved rule(s).
[Sat May 30 14:22:09 2026]
Error in rule run_bclconvert_lane:
    jobid: 6
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L004.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L004.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L004/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L004/bclconvert.done
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
    cluster_jobid: 3531

Error executing rule run_bclconvert_lane on cluster (jobid: 6, external: 3531, jobscript: /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/.snakemake/tmp.xg700ecs/snakejob.run_bclconvert_lane.6.sh). For error details see the cluster log and the log files of the involved rule(s).
[Sat May 30 14:22:09 2026]
Error in rule run_bclconvert_lane:
    jobid: 3
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L001.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 1 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L001.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L001/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L001/bclconvert.done
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
    cluster_jobid: 3532

Error executing rule run_bclconvert_lane on cluster (jobid: 3, external: 3532, jobscript: /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/.snakemake/tmp.xg700ecs/snakejob.run_bclconvert_lane.3.sh). For error details see the cluster log and the log files of the involved rule(s).
[Sat May 30 14:22:09 2026]
Error in rule run_bclconvert_lane:
    jobid: 4
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L002.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 2 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L002.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L002/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L002/bclconvert.done
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
    cluster_jobid: 3533

Error executing rule run_bclconvert_lane on cluster (jobid: 4, external: 3533, jobscript: /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/.snakemake/tmp.xg700ecs/snakejob.run_bclconvert_lane.4.sh). For error details see the cluster log and the log files of the involved rule(s).
[Sat May 30 14:22:29 2026]
Error in rule run_bclconvert_lane:
    jobid: 7
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L005.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 5 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L005.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005/Reports/fastq_list.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L005/Reports/Demultiplex_Stats.csv results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L005/bclconvert.done
        (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)
    cluster_jobid: 3525

Error executing rule run_bclconvert_lane on cluster (jobid: 7, external: 3525, jobscript: /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/.snakemake/tmp.xg700ecs/snakejob.run_bclconvert_lane.7.sh). For error details see the cluster log and the log files of the involved rule(s).
Trying to restart job 7.
Select jobs to execute...
[Sat May 30 14:22:29 2026]
Error in rule run_bclconvert_lane:
    jobid: 5
    input: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/validated.ok, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv
    output: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003/bclconvert.done, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003/Reports/fastq_list.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003/Reports/Demultiplex_Stats.csv, results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003/SampleSheet.csv
    log: results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.log (check log file(s) for error details)
    shell:
        TMPDIR=/dev/shm bash workflow/scripts/dyec_run_bclconvert_lane.sh docker://nfcore/bclconvert:4.0.3 /fsx/analysis_results/ubuntu/ccv20260530r41_illumina_bclconvert/daylily-omics-analysis/config/run_dir_links/20260514_LH01106_0009_B23TVLGLT4 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_fastqs/L003 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/normalized.SampleSheet.csv 3 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/lane_reports/L003/SampleSheet.csv false false false 1 16 8 48 16 false true 10000 '{}' '{}' -f 192 results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert/logs/run_bclconvert.L003.log results/runs/20260514_LH01106_0009_B23TVLGLT4/bclconvert--output truncated--
