DAY-EC activated.
DAY-EC activated.

		# Remove -n to execute (not dry-run)

Requesting profile: slurm
Attempting to deactivate existing environments & re-init with --project dyec-515 .
Remote call detected. Activating conda hack
 > >> >>>
ACTIVE CONFIG FILES NOT FOUND IN /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/day_profiles/slurm ... copying
Copying template yaml files to active config files /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/day_profiles/slurm
Copying template bash files to active config files /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/day_profiles/slurm
yq is already installed.
WARNING: sentieon lic file /fsx/references/runtime_assets/cached_envs/x.lic not found.
WARNING: SENTIEON_LICENSE was not configured with a valid file; auto assigning a detected Sentieon license: /fsx/references/runtime_assets/cached_envs/Life_Sciences_Manufacturing_Corporation_eval.lic

!!!!
!!!!
    WARNING: gittag:null not found touched in  ~/.config/daylily/null
     This might be fine if you have cloned a more recent release of daylily compared to the tagged version used to create this ephemeral cluster.
     ... however, this is not expected. If you are running an ephemeral cluster headnode for days+, this is not the intended use of daylily, a fresh build might be called for.
     This is checked by testing if ~/.config/daylily/null exists .
!!!!
 > >> >>>   genome build set to ::: hg38_broad
       _______ GREAT SUCCESS _______
Remote call detected. Activating conda hack
Your config files in /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/day_profiles/slurm are newer than the templates. clear 2 go.
Executing: snakemake --profile=/fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/day_profiles/slurm produce_ultima_run_qc -p -j 5 -k -n --config run_context_file=config/runs.tsv samples_table=.test_data/data/samples.tsv units_table=.test_data/data/units.tsv --config run_qc={"ultima":{"run_s3_uri":"s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/RUN602221/2026/602221-20260417_2346/","metrics_path":"config/ultima_run_qc_metrics.csv"}}
Config file config/global.yaml is extended by additional config specified via the command line.
loading global: /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/global_AWSPC.yaml
Config file config/global_AWSPC.yaml is extended by additional config specified via the command line.
loading profile rule_config: /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/day_profiles/slurm/rule_config.yaml
Config file config/day_profiles/slurm/rule_config.yaml is extended by additional config specified via the command line.
INFO::: The genome build hg38_broad is supported.  The genome build prefix is 'chr''.
...WARNING: No aligners set in the config.
aligners (final): []
...INFO: No dedupers set in config. Defaulting to na (no dedup).
deduper (final): [na]
...WARNING: No snv_callers set in the config.
SNV Callers (final): []
Somatic SNV Callers:[senttn]
... WARNING: No sv_callers set in the config.
SV Callers (final): []
A    N   A   L  Y S I S    SAMPLE TABLE DETECTED ::: /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/samples.tsv
A    N   A   L  Y S I S    UNIT TABLE DETECTED ::: /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/units.tsv
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_1x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_3x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_5x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_7x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_10x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_15x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_20x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/HG003_30x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_40x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_1x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_3x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_5x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_7x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_10x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_15x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_20x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/HG003_30x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_40x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_1x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_3x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_5x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_7x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_10x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_15x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_20x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/HG003_30x_R1.fastq.gz'
[Errno 2] No such file or directory: '/fsx/control_data/genomic_data/organism_reads/H_sapiens/giab/NovaSeqX_WHGS_TruSeqPF_HG002-007/downsampled/HG003_40x_R1.fastq.gz'
Building DAG of jobs...
Conda environment workflow/envs/run_qc_reports_v0.1.yaml will be created.
Conda environment workflow/envs/fastqc_v0.1.yaml will be created.
Conda environment workflow/envs/multiqc_v0.1.yaml will be created.
Job stats:
job                              count    min threads    max threads
-----------------------------  -------  -------------  -------------
produce_ultima_run_qc                1              1              1
ultima_demux_fastq_group_list        1              1              1
ultima_demux_fastq_multiqc           1              1              1
ultima_demux_fastq_qc                1              8              8
ultima_run_qc_report                 1              1              1
total                                5              1              8


[Sun May 31 20:12:02 2026]
localrule ultima_demux_fastq_group_list:
    output: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt
    log: results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_group_list.log
    jobid: 4
    benchmark: results/runs/602221-20260417_2346/run_qc/ultima/benchmarks/demux_fastq_group_list.bench.tsv
    reason: Missing output files: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/dev/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=block, exclusive=, constraint=, exclude=, include=


        set -euo pipefail
        mkdir -p $(dirname results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt) $(dirname results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_group_list.log)
        : > results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_group_list.log
        if [ -z /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/run_dir_links/602221-20260417_2346 ]; then
            echo "config/runs.tsv with PLATFORM=ULTIMA and RUN_DIR is required for Ultima demux FASTQ QC" >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_group_list.log
            exit 2
        fi
        test -d /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/run_dir_links/602221-20260417_2346
        find /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/run_dir_links/602221-20260417_2346 -type f \( -name '*.fastq.gz' -o -name '*.fq.gz' \) \
          | sed 's#/[^/]*$##' \
          | sort -u > results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt
        if [ ! -s results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt ]; then
            echo "No demux FASTQ groups found under /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/run_dir_links/602221-20260417_2346" >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_group_list.log
            exit 2
        fi


[Sun May 31 20:12:02 2026]
localrule ultima_run_qc_report:
    output: results/runs/602221-20260417_2346/run_qc/ultima/summary.html, results/runs/602221-20260417_2346/run_qc/ultima/summary.tsv, results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.done
    log: results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.log
    jobid: 1
    benchmark: results/runs/602221-20260417_2346/run_qc/ultima/benchmarks/ultima_run_qc_report.bench.tsv
    reason: Missing output files: results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.done
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/dev/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=block, exclusive=, constraint=, exclude=, include=


        set -euo pipefail
        mkdir -p $(dirname results/runs/602221-20260417_2346/run_qc/ultima/summary.html) $(dirname results/runs/602221-20260417_2346/run_qc/ultima/summary.tsv) $(dirname results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.log)
        python workflow/scripts/summarize_run_qc_report.py \
          --platform UG \
          --run-s3-uri s3://lsmc-ssf-sequencing-data/basecalls/lsmc/ssf-hq/RUN602221/2026/602221-20260417_2346/ \
          --metrics-path config/ultima_run_qc_metrics.csv \
          --output-html results/runs/602221-20260417_2346/run_qc/ultima/summary.html \
          --output-tsv results/runs/602221-20260417_2346/run_qc/ultima/summary.tsv \
          --done results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.done > results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.log 2>&1


[Sun May 31 20:12:02 2026]
localrule ultima_demux_fastq_qc:
    input: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt
    output: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/ultima_demux_fastq_qc.done
    log: results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log
    jobid: 3
    benchmark: results/runs/602221-20260417_2346/run_qc/ultima/benchmarks/demux_fastq_qc.bench.tsv
    reason: Missing output files: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/ultima_demux_fastq_qc.done; Input files updated by another job: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt
    threads: 8
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/dev/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=block, exclusive=, constraint=, exclude=, include=


        set -euo pipefail
        mkdir -p results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc $(dirname results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log)
        : > results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log
        command -v fastqc >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log 2>&1
        command -v seqkit >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log 2>&1
        run_dir="$(printf "%s" /fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis/config/run_dir_links/602221-20260417_2346 | sed 's:/*$::')"
        seen_ids="results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/.ultima_demux_fastq_qc_seen_ids"
        find results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc -mindepth 1 -maxdepth 1 -type d -exec rm -rf {} +
        : > "$seen_ids"
        while IFS= read -r fastq_dir; do
            rel="${fastq_dir#"$run_dir"/}"
            if [ "$rel" = "$fastq_dir" ]; then
                echo "Ultima demux FASTQ group is not under RUN_DIR: $fastq_dir" >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log
                exit 2
            fi
            group_token="$(printf "%s" "$rel" | sed 's#[^A-Za-z0-9._+-]#-#g; s#--*#-#g; s#^-##; s#-$##')"
            if [ -z "$group_token" ]; then
                echo "Could not derive Ultima demux FASTQ sample identifier from $fastq_dir" >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log
                exit 2
            fi
            sample="602221-20260417_2346-${group_token}"
            if grep -Fxq "$sample" "$seen_ids"; then
                echo "Duplicate Ultima demux FASTQ sample identifier $sample from $fastq_dir" >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log
                exit 2
            fi
            printf "%s\n" "$sample" >> "$seen_ids"
            sample_out="results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/$sample"
            input_dir="$sample_out/inputs"
            fastqc_dir="$sample_out/fastqc"
            file_list="$sample_out/$sample.fastq_files.txt"
            mkdir -p "$input_dir" "$fastqc_dir"
            find "$fastq_dir" -maxdepth 1 -type f \( -name '*.fastq.gz' -o -name '*.fq.gz' \) \
              | sort > "$file_list"
            if [ ! -s "$file_list" ]; then
                echo "No FASTQs found for $sample under $fastq_dir" >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log
                exit 2
            fi
            mapfile -t fastqs < "$file_list"
            seqkit stats --tabular "${fastqs[@]}" \
              > "$sample_out/$sample.seqkit_stats.tsv" \
              2>> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log
            fastqc_inputs=()
            idx=0
            for fastq in "${fastqs[@]}"; do
                idx="$((idx + 1))"
                base_token="$(basename "$fastq" | sed 's#[^A-Za-z0-9._+-]#-#g; s#--*#-#g; s#^-##; s#-$##')"
                link_path="$input_dir/$sample.$(printf '%03d' "$idx").$base_token"
                ln -sfn "$(realpath "$fastq")" "$link_path"
                fastqc_inputs+=("$link_path")
            done
            fastqc \
              -o "$fastqc_dir" \
              -t 8 \
              "${fastqc_inputs[@]}" \
              >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_qc.log 2>&1
        done < results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/fastq_group_dirs.txt


[Sun May 31 20:12:02 2026]
localrule ultima_demux_fastq_multiqc:
    input: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/ultima_demux_fastq_qc.done
    output: results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html
    log: results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_multiqc.log
    jobid: 2
    benchmark: results/runs/602221-20260417_2346/run_qc/ultima/benchmarks/demux_fastq_multiqc.bench.tsv
    reason: Missing output files: results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html; Input files updated by another job: results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc/ultima_demux_fastq_qc.done
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/dev/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=block, exclusive=, constraint=, exclude=, include=


        set -euo pipefail
        mkdir -p $(dirname results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html) $(dirname results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_multiqc.log)
        multiqc --version > results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_multiqc.log 2>&1 || true
        multiqc -f \
          -m fastqc \
          -m seqkit \
          --filename "$(basename results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html)" \
          --outdir "$(dirname results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html)" \
          results/runs/602221-20260417_2346/run_qc/ultima/demux_fastq_qc >> results/runs/602221-20260417_2346/run_qc/ultima/logs/demux_fastq_multiqc.log 2>&1
        test -s results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html


[Sun May 31 20:12:02 2026]
localrule produce_ultima_run_qc:
    input: results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.done, results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html
    log: results/day/hg38_broad/logs/produce_ultima_run_qc.log
    jobid: 0
    benchmark: results/day/hg38_broad/benchmarks/produce_ultima_run_qc.bench.tsv
    reason: Missing output files: results/day/hg38_broad/benchmarks/produce_ultima_run_qc.bench.tsv; Input files updated by another job: results/runs/602221-20260417_2346/run_qc/ultima/logs/ultima_run_qc_report.done, results/runs/602221-20260417_2346/run_qc/ultima/ultima_demux_fastq.multiqc.html
    resources: mem_mb=3000, mem_mib=2862, disk_mb=1000, disk_mib=954, tmpdir=/dev/shm, threads=1, time=5440, partition=i192,i128,i192mem, vcpu=1, distribution=block, exclusive=, constraint=, exclude=, include=

Job stats:
job                              count    min threads    max threads
-----------------------------  -------  -------------  -------------
produce_ultima_run_qc                1              1              1
ultima_demux_fastq_group_list        1              1              1
ultima_demux_fastq_multiqc           1              1              1
ultima_demux_fastq_qc                1              8              8
ultima_run_qc_report                 1              1              1
total                                5              1              8

Reasons:
    (check individual jobs above for details)
    input files updated by another job:
        produce_ultima_run_qc, ultima_demux_fastq_multiqc, ultima_demux_fastq_qc
    missing output files:
        produce_ultima_run_qc, ultima_demux_fastq_group_list, ultima_demux_fastq_multiqc, ultima_demux_fastq_qc, ultima_run_qc_report

This was a dry-run (flag -n). The order of jobs does not reflect the order of execution.
RETURN CODE: 0
[INFO] Workflow exited with status 0
To run a command as administrator (user "root"), use "sudo <command>".
See "man sudo_root" for details.

DAY-EC activated.
(DAY-EC) ubuntu@ip-10-0-0-93:/fsx/analysis_results/dyec-515/d515_0531t1930_r5_018_ultima_run_qc/daylily-omics-analysis$
