CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
pyproject.toml
src/ampliqc/__init__.py
src/ampliqc/cli.py
src/ampliqc.egg-info/PKG-INFO
src/ampliqc.egg-info/SOURCES.txt
src/ampliqc.egg-info/dependency_links.txt
src/ampliqc.egg-info/entry_points.txt
src/ampliqc.egg-info/requires.txt
src/ampliqc.egg-info/top_level.txt
src/ampliqc/context/amplicon.py
src/ampliqc/context/base.py
src/ampliqc/context/detector.py
src/ampliqc/context/longreads.py
src/ampliqc/core/adapters.py
src/ampliqc/core/kmer.py
src/ampliqc/core/parser.py
src/ampliqc/core/primers.py
src/ampliqc/core/stats.py
src/ampliqc/reports/helpers.py
src/ampliqc/reports/html.py
src/ampliqc/reports/json_report.py
src/ampliqc/reports/plots.py
src/ampliqc/reports/templates/report.html.j2
tests/test_amplicon.py
tests/test_cli.py
tests/test_helpers_and_batch.py
tests/test_longreads.py
tests/test_primers.py
tests/test_stats.py