numpy<2.0.0,>=1.20.0
pandas<=1.5.3,>=1.0.3
scanpy>=1.9.0
anndata>=0.8.0
matplotlib<3.7,>=3.6.3
seaborn>=0.11.0
scipy>=1.7.0
adjustText>=0.7.3
networkx>=2.6.0
igraph==0.11.9
leidenalg
fa2-modified
gseapy>=1.0.0
genomepy

[all]
genecircuitry[atac,enrichment,grn,hotspot,plotting]

[atac]
genomepy
gimmemotifs

[dev]
pytest>=7.0.0
pytest-cov>=3.0.0
black>=22.0.0
flake8>=4.0.0
mypy>=0.950

[enrichment]
gseapy>=1.0.0

[grn]
velocyto>=0.17.17
celloracle==0.18.0

[hotspot]
hotspotsc==1.1.3

[plotting]
matplotlib
