/Users/
**/.venv
.venv
./DS_Store
./__pycache__
.gitignore
data/out*
data/*html
!data/ref_data/
# Allow motif PNGs
!data/ref_data/Gibbs_motifs_human/motif/*.png
!data/ref_data/Gibbs_motifs_mouse/motif/*.png 
output/*
.DS_Store
# MkDocs build output
/site/
cli/*__pycache__
test_output
poetry.lock
*log
*logs
*notes
.pytest_cachedata.zip
data.zip
__pycache__
**env
test_results
*ipynb_checkpoints
*__pycache__
*ipynb
*.png
cli/test_imagegrid.py
test
cluster_search_v2
data/D105heartW632_361712_originally_labeled_D120/
Users
data/D105skinW6_32_305183/
hla_data.js
hla_data.json

#ignore extracted data
data/ref/*

uMAP.py

# pixi local environment (lockfile pixi.lock is committed; the env dir is not)
.pixi/
# reference parquets are fetched from the release, not committed (large)
data/ref_data/*.parquet

# local GibbsCluster sample inputs (test data, not shipped)
data/9mersonly/
data/P4724/
data/P6215/

# SLURM job logs
slurm-*.out

# Python build artifacts
/dist/
/build/
*.egg-info/

# exported reference logos (export-logos output)
ref_logos/
