MANIFEST.in
README.md
generate_reference_and_reads.py
methylDackel.sh
parameters.info
parameters_methyl100_ffpe.info
parameters_methyl100_noffpe.info
parameters_methyl50_ffpe.info
parameters_methyl50_noffpe.info
parameters_nometh_ffpe.info
parameters_nometh_noffpe.info
parameters_random_noise_high.info
parse_tables.sh
pyproject.toml
run_simulations.sh
setup.py
test.params.info
test.variants_proposed.tsv
tmp.sh
variants_proposed.tsv
damaged_reads_simulator.egg-info/PKG-INFO
damaged_reads_simulator.egg-info/SOURCES.txt
damaged_reads_simulator.egg-info/dependency_links.txt
damaged_reads_simulator.egg-info/entry_points.txt
damaged_reads_simulator.egg-info/requires.txt
damaged_reads_simulator.egg-info/top_level.txt
libs/__init__.py
libs/simulations_libs.py
libs/variant_generation_libs.py