numpy
numba>=0.56.2
pandas
scipy
anndata
pydantic<3.0,>=2.5

[analysis]
nbval>=0.10.0
nbdime>=4.0.2
ipython>=8.0.0
upsetplot
PyYAML
scanpy
seaborn
matplotlib
celltypist
mpl-scatter-density
astropy
scikit-learn
ipywidgets
torch
scikit-misc
adjustText
squidpy
tqdm
requests

[dev]
pytest>=7.0.0
black[jupyter]>=22.0.0
isort>=6.0.0
pympler>=1.1
