Alignment Features
- Automatic playback at variable frames-per-second
- Interactive SNR plot
- Project dictionary/JSON "tree" view
- Project data "table" view
- Zarr reading+writing (open source)
- Neuroglancer volumetric data viewer (Google, open source)
- Process monitor ("HUD")
- Python console
- Thumbnails
- original images
- correlation signal images
- aligned images
- Project progress tracking
- Rescaling...
- Rescaling functionality
- Alignment history preserved
- Immediately reveal change in SNR
- Superimpose SNR plots across all scales
- View correlation signals w/ corresponding regional SNR value
- Match-point alignment implemented in Neuroglancer
- Per-section notetaking
- Auto-generate ON/OFF switch
Neuroglancer/Visualization
- Detachable/"pop-out" viewer
- Layout options:
- "Stack" - aligned or unaligned only
- "Comparison" - reference vs. working [vs. aligned]
- Sliders for:
- Section #
- Zoom Level
- Z-magnification
- Full TensorStore integration (open source)
- SNR Plot synchropnized mini-Neuroglancers
- Toggle ON/OFF scale bar, panel borders, UI overlays
- Experimental volumetric viewer
Data Management
- Three compression options
- Unsaved changes always tracked
- Export AFMs/CAFM to .csv...
- Save user preferences between sessions
- Built-in file manager and project cacher
- Import project
- Open project
- Forget project
- Delete project
- File browser
- Object-oriented Data Model
- Gracefully handle multiple projects simultaneously (tabs!)
- Experimental Re-chunking (works but slow/non-parallel)
TACC
- Quickly access $WORK,$SCRATCH