.gitignore
AGENTS.md
CLAUDE.md
Justfile
LICENSE
README.md
pyproject.toml
uv.lock
.github/workflows/ci.yml
.github/workflows/publish.yml
bioio_vsi/__init__.py
bioio_vsi/__main__.py
bioio_vsi/_accessors.py
bioio_vsi/_anonymize.py
bioio_vsi/_anonymize_dates.py
bioio_vsi/_anonymize_tiff.py
bioio_vsi/_codecs.py
bioio_vsi/_describe.py
bioio_vsi/_describe_redact.py
bioio_vsi/_ets.py
bioio_vsi/_fixture_pixels.py
bioio_vsi/_materialize.py
bioio_vsi/_paths.py
bioio_vsi/_stack.py
bioio_vsi/_synthetic_numbers.py
bioio_vsi/_tree.py
bioio_vsi/_vsi.py
bioio_vsi/errors.py
bioio_vsi/py.typed
bioio_vsi/reader.py
bioio_vsi/reader_metadata.py
bioio_vsi.egg-info/PKG-INFO
bioio_vsi.egg-info/SOURCES.txt
bioio_vsi.egg-info/dependency_links.txt
bioio_vsi.egg-info/entry_points.txt
bioio_vsi.egg-info/requires.txt
bioio_vsi.egg-info/scm_file_list.json
bioio_vsi.egg-info/scm_version.json
bioio_vsi.egg-info/top_level.txt
bioio_vsi/tests/__init__.py
bioio_vsi/tests/conftest.py
bioio_vsi/tests/content_check.py
bioio_vsi/tests/interpreted_paths.py
bioio_vsi/tests/pixel_hash.py
bioio_vsi/tests/synthetic.py
bioio_vsi/tests/test_anonymised_fixtures.py
bioio_vsi/tests/test_anonymize.py
bioio_vsi/tests/test_bioio_reader.py
bioio_vsi/tests/test_committed_sample.py
bioio_vsi/tests/test_describe.py
bioio_vsi/tests/test_ets_index.py
bioio_vsi/tests/test_fixture_pixels.py
bioio_vsi/tests/test_materialize.py
bioio_vsi/tests/test_metadata.py
bioio_vsi/tests/test_paths_pickling.py
bioio_vsi/tests/test_pixel_read.py
bioio_vsi/tests/test_public_samples.py
bioio_vsi/tests/test_redact.py
bioio_vsi/tests/test_refusal.py
bioio_vsi/tests/test_tree_parse.py
bioio_vsi/tests/tree_rewrite.py
bioio_vsi/tests/resources/ATTRIBUTION.md
bioio_vsi/tests/resources/describe_redacted_committed.txt
bioio_vsi/tests/resources/vsi-ets-test-jpg2k.vsi
bioio_vsi/tests/resources/_vsi-ets-test-jpg2k_/stack1/frame_t_0.ets
bioio_vsi/tests/resources/anonymised/expected.json
bioio_vsi/tests/resources/anonymised/czt-z-up/anon.vsi
bioio_vsi/tests/resources/anonymised/czt-z-up/_anon_/stack1/frame_t_0.ets.skel
bioio_vsi/tests/resources/anonymised/single-plane/anon.vsi
bioio_vsi/tests/resources/anonymised/single-plane/_anon_/stack1/frame_t_0.ets.skel
bioio_vsi/tests/resources/anonymised/stitched-origin-1/anon.vsi
bioio_vsi/tests/resources/anonymised/stitched-origin-1/_anon_/stack1/frame_t_0.ets.skel
bioio_vsi/tests/resources/anonymised/stitched-origin-15/anon.vsi
bioio_vsi/tests/resources/anonymised/stitched-origin-15/_anon_/stack1/frame_t_0.ets.skel
bioio_vsi/tests/resources/anonymised/tzc-z-down/anon.vsi
bioio_vsi/tests/resources/anonymised/tzc-z-down/_anon_/stack1/frame_t_0.ets.skel
docs/design.md
docs/format.md
docs/samples.md