CITATION.cff
LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
build_support/native_sources.txt
build_support/python_binding_sources.txt
include/beam/common.h
include/beam/crc32c.h
include/beam/distance.h
include/beam/errors.h
include/beam/fingerprint.h
include/beam/insights.h
include/beam/mixture.h
include/beam/model.h
include/beam/publicness.h
include/beam/query.h
include/beam/rng.h
licenses/LLVM-OpenMP-LICENSE.txt
src/BEAM/__init__.py
src/BEAM/_banded_result.py
src/BEAM/_model.py
src/BEAM/_publicness.py
src/BEAM/_simulation_result.py
src/BEAM/constants.py
src/BEAM/errors.py
src/BEAM/runtime.py
src/BEAM/analytics/__init__.py
src/BEAM/analytics/atoms.py
src/BEAM/analytics/calibration.py
src/BEAM/analytics/distance.py
src/BEAM/analytics/exact_occupancy.py
src/BEAM/analytics/fingerprint.py
src/BEAM/analytics/histogram.py
src/BEAM/analytics/pseq.py
src/BEAM/analytics/rules.py
src/BEAM/analytics/scale.py
src/BEAM/diversity/__init__.py
src/BEAM/diversity/depth_matched.py
src/BEAM/diversity/results.py
src/BEAM/insights/__init__.py
src/BEAM/insights/logo.py
src/BEAM/insights/results.py
src/BEAM/io/__init__.py
src/BEAM/io/readers.py
src/BEAM/likelihood/__init__.py
src/BEAM/likelihood/chain.py
src/BEAM/likelihood/fixed_total.py
src/BEAM/likelihood/lattice.py
src/BEAM/likelihood/results.py
src/BEAM/math/__init__.py
src/BEAM/math/saddlepoint.py
src/BEAM/mixture/__init__.py
src/BEAM/mixture/errors.py
src/BEAM/mixture/mixture.py
src/BEAM/mixture/results.py
src/BEAM/model/__init__.py
src/BEAM/model/alphabets.py
src/BEAM/model/builder.py
src/BEAM/model/config.py
src/BEAM/model/facade.py
src/BEAM/model/fit.py
src/BEAM/model/validation.py
src/BEAM/pretrained/__init__.py
src/BEAM/pretrained/registry.json
src/BEAM/publicness/__init__.py
src/BEAM/publicness/cohort.py
src/BEAM/publicness/constants.py
src/BEAM/publicness/model.py
src/BEAM/query/__init__.py
src/BEAM/query/conditions.py
src/BEAM/query/engine.py
src/BEAM/query/errors.py
src/BEAM/results/__init__.py
src/beam_model.egg-info/PKG-INFO
src/beam_model.egg-info/SOURCES.txt
src/beam_model.egg-info/dependency_links.txt
src/beam_model.egg-info/requires.txt
src/beam_model.egg-info/top_level.txt
src/native/algorithms/distance.c
src/native/algorithms/fingerprint.c
src/native/algorithms/sampling.c
src/native/algorithms/top_k.c
src/native/bindings/python/algorithm_bindings.c
src/native/bindings/python/analytics_bindings.c
src/native/bindings/python/buffers.c
src/native/bindings/python/common.c
src/native/bindings/python/distance_bindings.c
src/native/bindings/python/fingerprint_bindings.c
src/native/bindings/python/guards.c
src/native/bindings/python/guards.h
src/native/bindings/python/insights_bindings.c
src/native/bindings/python/mixture_bindings.c
src/native/bindings/python/model_bindings.c
src/native/bindings/python/module.c
src/native/bindings/python/publicness_bindings.c
src/native/bindings/python/query_bindings.c
src/native/bindings/python/scoring_bindings.c
src/native/core/alphabet.c
src/native/core/alphabet_aa.c
src/native/core/alphabet_nt.c
src/native/core/crc32c.c
src/native/core/errors.c
src/native/core/rng.c
src/native/core/threads.c
src/native/dp/backward.c
src/native/dp/edge_weights.c
src/native/dp/edge_weights_kernels.h
src/native/dp/jet.c
src/native/dp/liveness.c
src/native/dp/partition.c
src/native/dp/path_count.c
src/native/dp/rescale.c
src/native/dp/topology.c
src/native/insights/logo.c
src/native/internal/beam/alphabet.h
src/native/internal/beam/budget.h
src/native/internal/beam/dp.h
src/native/internal/beam/error_macros.h
src/native/internal/beam/fb_sweep.h
src/native/internal/beam/frozen_counts.h
src/native/internal/beam/grid.h
src/native/internal/beam/indexing.h
src/native/internal/beam/internal.h
src/native/internal/beam/live_frontier.h
src/native/internal/beam/math_internal.h
src/native/internal/beam/memory.h
src/native/internal/beam/mixing.h
src/native/internal/beam/model_build.h
src/native/internal/beam/model_state.h
src/native/internal/beam/occupancy_internal.h
src/native/internal/beam/provenance.h
src/native/internal/beam/python_bindings.h
src/native/internal/beam/query_internal.h
src/native/internal/beam/reduction.h
src/native/internal/beam/sparse_rows.h
src/native/internal/beam/table_access.h
src/native/internal/beam/vmath.h
src/native/io/model_file.c
src/native/math/cumulants.c
src/native/math/diversity.c
src/native/math/expected_counts.c
src/native/math/extrema.c
src/native/math/fb_sweep.c
src/native/math/lgamma_ratio.c
src/native/math/marginals.c
src/native/math/mellin.c
src/native/math/moments.c
src/native/math/positional.c
src/native/math/positional_banded.c
src/native/math/spectrum.c
src/native/math/surprisal.c
src/native/math/tilt.c
src/native/math/transitions.c
src/native/math/vtrig.c
src/native/math/ztp_moments.c
src/native/memory/account.c
src/native/memory/accounting.c
src/native/memory/allocator.c
src/native/memory/budget.c
src/native/memory/live_cache.c
src/native/mixture/inner_product.c
src/native/mixture/shape.c
src/native/mixture/support.c
src/native/model/algebra.c
src/native/model/config.c
src/native/model/encoding.c
src/native/model/finalize.c
src/native/model/freeze.c
src/native/model/introspection.c
src/native/model/lifecycle.c
src/native/model/posterior.c
src/native/model/scoring.c
src/native/model/temper.c
src/native/model/training.c
src/native/occupancy/poisson_binomial/accumulation.c
src/native/occupancy/poisson_binomial/common.c
src/native/occupancy/poisson_binomial/moments.c
src/native/occupancy/poisson_binomial/pgf.c
src/native/query/automaton.c
src/native/query/constraint.c
src/native/query/engine.c
src/native/query/expectation.c
src/native/query/indel.c
src/native/query/information.c
src/native/query/plan.c
src/native/query/posterior.c
src/native/query/product.c
src/native/storage/compaction.c
src/native/storage/frozen_counts.c
src/native/storage/packed_rows.c
src/native/storage/sparse_rows.c