torch>=1.13.0
torch-geometric>=2.3.0
numpy>=1.24.0
scipy>=1.10.0
scikit-learn>=1.2.0
h5py>=3.7.0
networkx>=2.8.0
biopython>=1.78
fair-esm>=2.0.0
pdb2sql>=0.5.3
pandas>=2.0.0
tqdm>=4.64.0
python-louvain>=0.15
markov-clustering>=0.0.6.dev0
freesasa>=2.2.0
matplotlib>=3.7.0
plotly>=5.0.0
chart-studio>=1.1.0

[dev]
pytest>=7.4.0
pytest-cov>=4.0.0
hypothesis>=6.0.0
